CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70243	Canola	cytosol	97.96	94.74
CDX94925	Canola	cytosol	96.6	86.59
CDX88726	Canola	cytosol	82.31	56.02
CDX88725	Canola	cytosol	82.31	56.02
KRH29838	Soybean	endoplasmic reticulum	80.27	55.14
CDY31592	Canola	cytosol	80.95	55.09
VIT_06s0004g04200.t01	Wine grape	cytosol	80.95	55.09
AT5G59840.1	Thale cress	cytosol	80.95	55.09
KRH24835	Soybean	cytosol	79.59	54.67
CDX68365	Canola	cytosol	80.27	54.63
CDY71506	Canola	cytosol	80.27	54.63
CDX86045	Canola	cytosol	79.59	54.17
PGSC0003DMT400040138	Potato	cytosol	78.91	53.7
CDY30926	Canola	cytosol	78.91	53.7
CDY09249	Canola	cytosol	78.91	53.7
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	78.91	53.7
KRH23030	Soybean	endoplasmic reticulum	78.23	53.49
Os07t0239400-01	Rice	plasma membrane	78.23	53.49
KRH10292	Soybean	cytosol	78.23	53.49
Os03t0819900-01	Rice	plasma membrane	77.55	53.27
PGSC0003DMT400008917	Potato	cytosol	78.23	53.24
CDX77855	Canola	cytosol	78.23	53.24
Zm00001d034638_P001	Maize	cytosol	77.55	53.02
Zm00001d010538_P005	Maize	cytosol	77.55	53.02
EES19652	Sorghum	cytosol	77.55	53.02
Zm00001d038380_P001	Maize	extracellular, plasma membrane	77.55	53.02
TraesCS1D01G285200.1	Wheat	cytosol	76.87	52.8
TraesCS1B01G295600.1	Wheat	cytosol	76.87	52.8
TraesCS1A01G286200.1	Wheat	cytosol	76.87	52.8
EER93195	Sorghum	cytosol	76.87	52.8
Os05t0461300-01	Rice	plastid	77.55	52.78
GSMUA_Achr9P03220_001	Banana	cytosol	77.55	52.78
GSMUA_Achr11P...	Banana	cytosol	77.55	52.78
GSMUA_AchrUn_...	Banana	cytosol	76.87	52.31
GSMUA_Achr6P34270_001	Banana	cytosol	76.87	52.31
GSMUA_Achr10P...	Banana	cytosol	76.87	52.31
CDX80224	Canola	cytosol	75.51	52.11
GSMUA_Achr10P...	Banana	cytosol	76.19	51.85
TraesCS3B01G388900.1	Wheat	cytosol	75.51	51.39
TraesCS3A01G356000.3	Wheat	plastid	75.51	51.39
CDY11256	Canola	cytosol	75.51	51.15
TraesCS5B01G489300.1	Wheat	golgi	74.15	50.93
TraesCS5A01G476400.1	Wheat	cytosol	73.47	50.47
TraesCS5D01G489700.1	Wheat	cytosol	73.47	50.47
GSMUA_Achr8P02620_001	Banana	cytosol	74.15	50.46
OQU88745	Sorghum	cytosol	76.87	50.0
CDY54609	Canola	cytosol	74.15	50.0
HORVU1Hr1G072070.1	Barley	cytosol	76.19	49.78
CDX80871	Canola	cytosol	75.51	49.78
CDY41572	Canola	cytosol	73.47	49.54
Solyc06g005350.2.1	Tomato	cytosol	47.62	48.61
TraesCS3D01G350000.3	Wheat	cytosol	76.19	47.06
CDY07577	Canola	cytosol	80.27	44.19
CDY72056	Canola	cytosol	37.41	44.0
CDY52746	Canola	cytosol	80.27	43.87
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	72.79	41.31
HORVU3Hr1G086830.7	Barley	cytosol	73.47	40.75
CDX99131	Canola	cytosol	78.91	37.66
CDY47919	Canola	vacuole	51.02	36.41
CDY56593	Canola	cytosol	50.34	35.92
CDX73855	Canola	cytosol	50.34	35.92
CDY65880	Canola	cytosol	48.98	35.64
CDX76566	Canola	cytosol	48.98	35.64
CDY33521	Canola	cytosol	48.3	35.15
CDX77748	Canola	cytosol	48.3	35.15
CDY43436	Canola	cytosol	47.62	34.65
CDY28967	Canola	cytosol	47.62	34.65
CDX90468	Canola	cytosol	47.62	34.65
CDY40564	Canola	cytosol	47.62	34.65
CDY67887	Canola	cytosol	47.62	34.48
CDX85225	Canola	cytosol	36.73	34.18
CDY52557	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	48.3	33.33
CDY38404	Canola	endoplasmic reticulum	48.3	32.42
CDY38055	Canola	cytosol	47.62	29.54
CDY09621	Canola	cytosol	46.26	27.98
CDY50126	Canola	cytosol	34.69	24.29
CDY58166	Canola	cytosol	34.69	24.29
CDX75535	Canola	cytosol	34.69	24.17
CDX69177	Canola	cytosol	34.69	24.17
CDY09641	Canola	cytosol	34.69	24.17
CDY42961	Canola	cytosol	34.69	24.17
CDY35596	Canola	cytosol	34.69	24.17
CDY47039	Canola	plasma membrane	33.33	23.22
CDX72559	Canola	cytosol	33.33	23.22

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078H8Z1	UniProt:A0A078H8Z1	EnsemblPlants:CDY34032	ProteinID:CDY34032
ProteinID:CDY34032.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00055900001	InterPro:P-loop_NTPase	PFAM:PF00071	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540
InterPro:Small_GTPase	UniParc:UPI0004EEE79E	:	:	:	:

Description

BnaC03g27830DBnaC03g27830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8Z1]

Coordinates

chrLK032326:-:294453..295790

Molecular Weight (calculated)

16836.7 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.769

Length

147 amino acids

Sequence
(BLAST)

001: MGLGLILDAT KDDEPDPYTR GIDFKIRTIE LDTEHIKLQI WDTAGQERFR TITTDIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE
101: YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LTDTDSRAED EKKCNRS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.