Factsheet for TraesCS3A01G356000.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3A01G185700.1
TraesCS3B01G122600.1
TraesCS3B01G215300.1
TraesCS3D01G106500.1
TraesCS3D01G189700.1
TraesCS3D01G373900.1	peroxisome
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	TraesCS3D01G373900.1	AT1G29260.1	23297417
AT3G46060.1	TraesCS3A01G185700.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS3B01G215300.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS3D01G189700.1	AT3G06540.1	21798944
AT3G46060.1	TraesCS1A01G124100.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS1B01G143000.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS1D01G130300.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3A01G104300.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3B01G122600.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS3D01G106500.1	AT3G13720.1	21798944
AT3G46060.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT3G46060.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT3G46060.1	TraesCSU01G065800.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G388900.1	Wheat	cytosol	99.54	99.54
CDY72056	Canola	cytosol	56.02	96.8
TraesCS1A01G286200.1	Wheat	cytosol	93.06	93.93
Solyc06g005350.2.1	Tomato	cytosol	62.5	93.75
GSMUA_Achr10P...	Banana	cytosol	92.13	92.13
GSMUA_Achr11P...	Banana	cytosol	92.13	92.13
GSMUA_Achr9P03220_001	Banana	cytosol	92.13	92.13
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	91.2	91.2
GSMUA_Achr6P34270_001	Banana	cytosol	91.2	91.2
PGSC0003DMT400040138	Potato	cytosol	90.74	90.74
KRH29838	Soybean	endoplasmic reticulum	89.81	90.65
VIT_13s0019g00520.t01	Wine grape	extracellular	90.28	90.28
GSMUA_AchrUn_...	Banana	cytosol	90.28	90.28
Bra019475.1-P	Field mustard	cytosol	90.28	90.28
KRH24835	Soybean	cytosol	89.35	90.19
KRH70501	Soybean	endoplasmic reticulum	89.81	89.81
KRH01606	Soybean	endoplasmic reticulum	89.81	89.81
CDY30926	Canola	cytosol	89.81	89.81
TraesCS3D01G350000.3	Wheat	cytosol	98.61	89.5
KRH36193	Soybean	endoplasmic reticulum, extracellular	89.35	89.35
VIT_08s0040g02490.t01	Wine grape	cytosol	89.35	89.35
PGSC0003DMT400022823	Potato	cytosol	89.35	89.35
GSMUA_Achr8P02620_001	Banana	cytosol	89.35	89.35
Solyc09g010370.2.1	Tomato	extracellular, plastid	89.35	89.35
CDX86045	Canola	cytosol	88.89	88.89
CDX68365	Canola	cytosol	88.89	88.89
AT3G46060.1	Thale cress	cytosol	88.89	88.89
KRG90563	Soybean	cytosol	88.89	88.89
CDX77855	Canola	cytosol	88.89	88.89
PGSC0003DMT400049296	Potato	cytosol	88.89	88.89
PGSC0003DMT400071317	Potato	cytosol	88.89	88.89
AT5G59840.1	Thale cress	cytosol	88.89	88.89
CDY71506	Canola	cytosol	88.89	88.89
VIT_06s0004g04200.t01	Wine grape	cytosol	88.89	88.89
Bra002527.1-P	Field mustard	cytosol	88.43	88.43
CDY31592	Canola	cytosol	88.43	88.43
Solyc04g011360.2.1	Tomato	plastid	88.43	88.43
KRH10292	Soybean	cytosol	87.96	88.37
KRH23030	Soybean	endoplasmic reticulum	87.96	88.37
TraesCS5A01G476400.1	Wheat	cytosol	87.5	88.32
PGSC0003DMT400008917	Potato	cytosol	87.96	87.96
AT3G53610.3	Thale cress	cytosol	87.5	87.5
Solyc10g086350.1.1	Tomato	cytosol, nucleus	87.5	87.5
GSMUA_Achr10P...	Banana	cytosol	87.5	87.5
Bra033830.1-P	Field mustard	cytosol	77.78	87.05
Bra006690.1-P	Field mustard	cytosol	87.04	87.04
CDX88725	Canola	cytosol	86.57	86.57
CDX88726	Canola	cytosol	86.57	86.57
CDX80224	Canola	cytosol	85.19	86.39
Bra020282.1-P	Field mustard	cytosol	84.26	84.26
CDY09249	Canola	cytosol	83.8	83.8
CDY34032	Canola	cytosol	51.39	75.51
CDY70243	Canola	cytosol	50.93	72.37
CDY07577	Canola	cytosol	87.5	70.79
Bra003149.1-P	Field mustard	cytosol	87.04	69.89
CDY52746	Canola	cytosol	87.04	69.89
HORVU3Hr1G086830.7	Barley	cytosol	85.19	69.43
CDX94925	Canola	cytosol	51.85	68.29
CDX99131	Canola	cytosol	89.35	62.66
TraesCS3A01G056500.1	Wheat	cytosol	56.48	60.1
TraesCS3A01G056600.1	Wheat	cytosol	56.48	60.1
TraesCS3A01G203100.1	Wheat	plastid	56.02	59.61
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	51.39	54.15
TraesCS3A01G056800.1	Wheat	cytosol	45.83	52.38
TraesCS2A01G311000.3	Wheat	cytosol	51.39	52.11
Bra038265.1-P	Field mustard	cytosol	88.89	51.06
TraesCS3A01G056900.1	Wheat	mitochondrion	35.19	45.51
TraesCS3A01G056700.1	Wheat	cytosol	51.39	43.53
TraesCS6A01G207100.1	Wheat	cytosol	41.67	42.86
TraesCS2A01G331600.1	Wheat	cytosol	41.67	42.86
TraesCS3A01G489900.1	Wheat	cytosol	30.09	36.31
TraesCS5A01G256000.1	Wheat	cytosol	33.8	35.61

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	PANTHER:PTHR24073:SF646	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3A01G356000	EnsemblPlants:TraesCS3A01G356000.3	TIGR:cd01867	SEG:seg	:

Description

No Description!

Coordinates

chr3A:+:603807990..603811687

Molecular Weight (calculated)

24123.6 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.386

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILIGNKA DMDESKRAVS TAKGQALADE YGIQFFETSA KTNLNVEQVF FSIARDIKQR LAETDSKPEV KDQTIKINKT
201: EGSENPESQK SACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.