Factsheet for TraesCS3A01G203100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 16595579
plastid: 18419817
plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G048090.1	Barley	plasma membrane	100.0	100.0
Os01t0558600-01	Rice	plasma membrane	97.04	97.52
EES03124	Sorghum	cytosol	95.57	95.57
Zm00001d011162_P002	Maize	plasma membrane	95.07	95.07
TraesCS3B01G230700.1	Wheat	cytosol	98.03	90.05
TraesCS3D01G206600.1	Wheat	cytosol	98.03	90.05
TraesCS3A01G056600.1	Wheat	cytosol	86.7	86.7
TraesCS3A01G056500.1	Wheat	cytosol	86.21	86.21
TraesCS3A01G056800.1	Wheat	cytosol	73.4	78.84
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	74.88	74.15
TraesCS2A01G311000.3	Wheat	cytosol	72.41	69.01
TraesCS3A01G056900.1	Wheat	mitochondrion	54.19	65.87
TraesCS3A01G056700.1	Wheat	cytosol	74.88	59.61
TraesCS1A01G286200.1	Wheat	cytosol	59.11	56.07
TraesCS5A01G476400.1	Wheat	cytosol	59.11	56.07
TraesCS3A01G356000.3	Wheat	plastid	59.61	56.02
TraesCS6A01G207100.1	Wheat	cytosol	48.28	46.67
TraesCS2A01G331600.1	Wheat	cytosol	46.8	45.24
TraesCS5A01G256000.1	Wheat	cytosol	41.87	41.46
TraesCS3A01G489900.1	Wheat	cytosol	34.98	39.66

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF845	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS3A01G203100	EnsemblPlants:TraesCS3A01G203100.1	TIGR:cd01869	:	:	:

Description

No Description!

Coordinates

chr3A:-:348994236..348997279

Molecular Weight (calculated)

22504.6 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.299

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLAESRV VSYEAGKALA DEIGIPFLET SAKDATNVEK AFMTMAAEIK NRMASQPAGN ASKPATVQMR GQPVAQQNGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.