Factsheet for HORVU3Hr1G048090.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G203100.1	Wheat	plastid	100.0	100.0
Os01t0558600-01	Rice	plasma membrane	97.04	97.52
EES03124	Sorghum	cytosol	95.57	95.57
Zm00001d011162_P002	Maize	plasma membrane	95.07	95.07
TraesCS3B01G230700.1	Wheat	cytosol	98.03	90.05
TraesCS3D01G206600.1	Wheat	cytosol	98.03	90.05
HORVU3Hr1G010800.8	Barley	cytosol	65.52	81.6
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	73.4	66.22
HORVU3Hr1G010780.1	Barley	plasma membrane	87.68	63.8
HORVU1Hr1G072070.1	Barley	cytosol	59.11	53.33
HORVU6Hr1G051470.1	Barley	cytosol	48.28	46.67
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	56.16	44.02
HORVU3Hr1G086830.7	Barley	cytosol	50.74	38.87
HORVU5Hr1G071600.3	Barley	cytosol	39.41	37.21

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EMBL:AK354165	UniProt:F2CRB3	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G048090
EnsemblPlants:HORVU3Hr1G048090.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF845	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00016F1650	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CRB3]

Coordinates

chrchr3H:-:330287509..330291124

Molecular Weight (calculated)

22504.6 Da

IEP (calculated)

4.897

GRAVY (calculated)

-0.299

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLAESRV VSYEAGKALA DEIGIPFLET SAKDATNVEK AFMTMAAEIK NRMASQPAGN ASKPATVQMR GQPVAQQNGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.