Factsheet for HORVU3Hr1G010780.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G056500.1	Wheat	golgi	72.4	99.51
TraesCS3A01G056500.1	Wheat	cytosol	71.33	98.03
HORVU3Hr1G010800.8	Barley	cytosol	54.84	93.86
EES07529	Sorghum	cytosol	67.74	93.1
Os01t0179700-01	Rice	plasma membrane	67.74	93.1
Os02t0653800-01	Rice	plasma membrane	67.74	93.1
KRH01059	Soybean	endoplasmic reticulum	67.03	92.57
KRH57496	Soybean	endoplasmic reticulum	66.67	92.08
KRH04201	Soybean	cytosol, extracellular	66.31	91.58
VIT_00s1372g00020.t01	Wine grape	cytosol	64.87	91.41
VIT_16s0013g00520.t01	Wine grape	extracellular	66.31	91.13
GSMUA_Achr2P18340_001	Banana	plasma membrane	65.95	91.09
KRH40178	Soybean	endoplasmic reticulum	65.95	91.09
Solyc05g052070.2.1	Tomato	unclear	65.95	90.64
GSMUA_Achr8P15030_001	Banana	cytosol	65.59	90.15
Solyc08g078070.2.1	Tomato	nucleus	65.59	90.15
PGSC0003DMT400041326	Potato	cytosol	65.23	89.66
PGSC0003DMT400067463	Potato	cytosol	65.23	89.66
AT1G02130.1	Thale cress	cytosol	64.52	88.67
KRH66494	Soybean	endoplasmic reticulum	64.16	88.18
GSMUA_Achr11P...	Banana	cytosol	64.16	88.18
HORVU3Hr1G048090.1	Barley	plasma membrane	63.8	87.68
Bra012658.1-P	Field mustard	cytosol	62.72	86.63
Bra017497.1-P	Field mustard	cytosol	62.72	86.63
Bra022113.1-P	Field mustard	cytosol	62.72	86.63
Bra024956.1-P	Field mustard	cytosol	62.72	86.63
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.72	86.21
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	62.72	86.21
Solyc01g090170.2.1	Tomato	unclear	59.86	82.27
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	65.95	81.06
CDY38055	Canola	cytosol	67.74	79.75
KRH48822	Soybean	cytosol, endoplasmic reticulum	43.73	77.22
GSMUA_Achr7P06570_001	Banana	cytosol	68.1	69.09
Zm00001d051336_P001	Maize	plastid	66.67	68.38
TraesCS3A01G056700.1	Wheat	cytosol	60.93	66.67
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	52.33	64.89
Bra040162.1-P	Field mustard	cytosol	62.72	63.87
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	67.38	62.46
VIT_15s0021g01410.t01	Wine grape	cytosol	45.16	61.46
HORVU1Hr1G072070.1	Barley	cytosol	43.37	53.78
HORVU6Hr1G051470.1	Barley	cytosol	35.13	46.67
Zm00001d017456_P003	Maize	cytosol	66.31	46.13
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	41.22	44.4
HORVU3Hr1G086830.7	Barley	cytosol	37.99	40.0
HORVU5Hr1G071600.3	Barley	cytosol	29.39	38.14

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	UniProt:A0A287K369	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G010780	EnsemblPlants:HORVU3Hr1G010780.1
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000B488EF0	SEG:seg	:

Description

No Description!

Coordinates

chrchr3H:+:23642210..23646571

Molecular Weight (calculated)

31076.7 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.619

Length

279 amino acids

Sequence
(BLAST)

001: EHARARARPT TGAHLSATHP PVDGPRIPHF RGFLENNQIR AGQRNRRRRS PPPPPPPVPS RRPGDRSAPR QDPDPAMNPE YDYLFKLLLI GDSGVGKSCL
101: LLRFADDSYL DSYISTIGVD FKIRTVEQDG KTIKLQIWDT AGQERFRTIT SSYYRGAHGI IIVYDVTDQD SFNNVKQWLN EIDRYASENV NKLLVGNKCD
201: LADKRAVSYE TAKAFADEIG IPFMETSAKN ALNVEQAFMA MAASIKDRMA SQPAANNARP ATVQIRGQPV DQKTSCCSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.