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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01059 Soybean endoplasmic reticulum 93.1 93.56
KRH40178 Soybean endoplasmic reticulum 92.61 93.07
KRH48822 Soybean cytosol, endoplasmic reticulum 71.43 91.77
AT1G02130.1 Thale cress cytosol 91.13 91.13
KRH57496 Soybean endoplasmic reticulum 89.66 90.1
Os02t0653800-01 Rice plasma membrane 89.66 89.66
Os01t0179700-01 Rice plasma membrane 89.66 89.66
TraesCS3B01G070300.2 Wheat cytosol 89.66 89.66
TraesCS3A01G056600.1 Wheat cytosol 89.66 89.66
TraesCS3D01G056600.1 Wheat plastid 89.66 89.66
KRH04201 Soybean cytosol, extracellular 89.16 89.6
GSMUA_Achr8P15030_001 Banana cytosol 89.16 89.16
PGSC0003DMT400034028 Potato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 89.16 89.16
Solyc05g053940.2.1 Tomato nucleus, plastid, unclear 89.16 89.16
GSMUA_Achr2P18340_001 Banana plasma membrane 88.67 89.11
GSMUA_Achr11P... Banana cytosol 88.67 88.67
EES07529 Sorghum cytosol 88.67 88.67
TraesCS3D01G056500.1 Wheat golgi 88.18 88.18
TraesCS3A01G056500.1 Wheat cytosol 86.7 86.7
Bra024956.1-P Field mustard cytosol 85.22 85.64
Bra022113.1-P Field mustard cytosol 85.22 85.64
Bra017497.1-P Field mustard cytosol 85.22 85.64
HORVU3Hr1G010800.8 Barley cytosol 68.47 85.28
Solyc01g090170.2.1 Tomato unclear 85.22 85.22
Bra012658.1-P Field mustard cytosol 84.24 84.65
TraesCS3A01G056800.1 Wheat cytosol 76.35 82.01
GSMUA_Achr1P04400_001 Banana endoplasmic reticulum, extracellular, plasma membrane 88.18 78.85
CDY38055 Canola cytosol 89.66 76.79
KRH06045 Soybean cytosol 74.88 75.62
KRH26285 Soybean endoplasmic reticulum 73.89 74.63
TraesCS3A01G056900.1 Wheat mitochondrion 56.65 68.86
Zm00001d051336_P001 Maize plastid 86.21 64.34
HORVU3Hr1G010780.1 Barley plasma membrane 88.18 64.16
GSMUA_Achr7P06570_001 Banana cytosol 86.7 64.0
VIT_15s0021g01410.t01 Wine grape cytosol 62.07 61.46
Bra040162.1-P Field mustard cytosol 82.76 61.31
GSMUA_Achr11P... Banana endoplasmic reticulum, plastid 89.16 60.13
KRH23030 Soybean endoplasmic reticulum 62.07 58.6
KRH10292 Soybean cytosol 62.07 58.6
TraesCS3A01G056700.1 Wheat cytosol 73.4 58.43
KRH29838 Soybean endoplasmic reticulum 61.58 58.41
KRH36193 Soybean endoplasmic reticulum, extracellular 62.07 58.33
KRH24835 Soybean cytosol 61.08 57.94
KRH01606 Soybean endoplasmic reticulum 61.58 57.87
KRG90563 Soybean cytosol 61.58 57.87
KRH70501 Soybean endoplasmic reticulum 61.58 57.87
KRH36659 Soybean cytosol 45.81 44.08
KRH11646 Soybean endoplasmic reticulum 45.81 44.08
Zm00001d017456_P003 Maize cytosol 86.7 43.89
KRG93957 Soybean endoplasmic reticulum 45.32 43.6
KRH58242 Soybean endoplasmic reticulum 45.32 43.6
Protein Annotations
MapMan:22.8.1.4Gene3D:3.40.50.300UniProt:A0A0R0KHH6EMBL:ACUP02001977EnsemblPlantsGene:GLYMA_03G110200GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787
EnsemblPlants:KRH66494ProteinID:KRH66494ProteinID:KRH66494.1InterPro:P-loop_NTPasePFAM:PF00071PRINTS:PR00449
PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF666SMART:SM00173SMART:SM00174SMART:SM00175
SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231
UniParc:UPI00019AA8FC:::::
Description
hypothetical protein
Coordinates
chr3:+:31398691..31402685
Molecular Weight (calculated)
22553.6 Da
IEP (calculated)
4.867
GRAVY (calculated)
-0.333
Length
203 amino acids
Sequence
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYIESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEDSFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTANRV VSYDTAKEFA DQIGIPFMET SAKDATNVED AFMAMSAAIK NRMASQPSAN NARPPTVQIR GQPVGQKSGC
201: CSS
Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)
001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST
Arabidopsis Description
RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.