Factsheet for GSMUA_Achr2P18340_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1372g00020.t01	Wine grape	cytosol	93.56	95.45
GSMUA_Achr11P...	Banana	cytosol	95.54	95.07
GSMUA_Achr8P15030_001	Banana	cytosol	94.55	94.09
KRH57496	Soybean	endoplasmic reticulum	94.06	94.06
Os02t0653800-01	Rice	plasma membrane	94.06	93.6
Os01t0179700-01	Rice	plasma membrane	94.06	93.6
Solyc08g078070.2.1	Tomato	nucleus	94.06	93.6
KRH04201	Soybean	cytosol, extracellular	93.56	93.56
PGSC0003DMT400067463	Potato	cytosol	93.56	93.1
EES07529	Sorghum	cytosol	93.07	92.61
VIT_16s0013g00520.t01	Wine grape	extracellular	93.07	92.61
TraesCS3A01G056600.1	Wheat	cytosol	92.08	91.63
TraesCS3B01G070300.2	Wheat	cytosol	92.08	91.63
TraesCS3D01G056600.1	Wheat	plastid	92.08	91.63
KRH01059	Soybean	endoplasmic reticulum	91.58	91.58
KRH40178	Soybean	endoplasmic reticulum	91.09	91.09
TraesCS3D01G056500.1	Wheat	golgi	91.09	90.64
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.59	90.15
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	90.59	90.15
Bra012658.1-P	Field mustard	cytosol	90.1	90.1
GSMUA_Achr7P24260_001	Banana	cytosol	89.6	89.6
TraesCS3A01G056500.1	Wheat	cytosol	89.6	89.16
AT1G02130.1	Thale cress	cytosol	89.6	89.16
Bra022113.1-P	Field mustard	cytosol	89.11	89.11
Bra017497.1-P	Field mustard	cytosol	89.11	89.11
HORVU3Hr1G010800.8	Barley	cytosol	71.78	88.96
KRH66494	Soybean	endoplasmic reticulum	89.11	88.67
Bra024956.1-P	Field mustard	cytosol	88.61	88.61
GSMUA_Achr3P32240_001	Banana	cytosol	88.12	88.12
Solyc05g052070.2.1	Tomato	unclear	88.12	87.68
PGSC0003DMT400041326	Potato	cytosol	88.12	87.68
Solyc01g090170.2.1	Tomato	unclear	84.65	84.24
TraesCS3A01G056800.1	Wheat	cytosol	78.71	84.13
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	94.06	83.7
KRH48822	Soybean	cytosol, endoplasmic reticulum	60.4	77.22
CDY38055	Canola	cytosol	90.1	76.79
GSMUA_Achr10P...	Banana	cytosol	73.76	73.76
TraesCS3A01G056900.1	Wheat	mitochondrion	58.42	70.66
GSMUA_Achr7P06570_001	Banana	cytosol	92.08	67.64
Zm00001d051336_P001	Maize	plastid	90.59	67.28
HORVU3Hr1G010780.1	Barley	plasma membrane	91.09	65.95
Bra040162.1-P	Field mustard	cytosol	87.62	64.6
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	95.54	64.12
VIT_15s0021g01410.t01	Wine grape	cytosol	62.87	61.95
TraesCS3A01G056700.1	Wheat	cytosol	77.72	61.57
GSMUA_Achr6P17450_001	Banana	cytosol	76.24	61.11
GSMUA_AchrUn_...	Banana	cytosol	61.39	57.41
GSMUA_Achr6P34270_001	Banana	cytosol	60.89	56.94
GSMUA_Achr11P...	Banana	cytosol	60.89	56.94
GSMUA_Achr9P03220_001	Banana	cytosol	60.89	56.94
GSMUA_Achr10P...	Banana	cytosol	60.4	56.48
GSMUA_Achr8P02620_001	Banana	cytosol	59.41	55.56
GSMUA_Achr10P...	Banana	cytosol	58.91	55.09
Zm00001d017456_P003	Maize	cytosol	91.09	45.89
GSMUA_Achr9P27910_001	Banana	plasma membrane	47.52	45.5
GSMUA_Achr3P04210_001	Banana	cytosol	46.53	44.55
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	29.21	42.45
GSMUA_Achr4P09730_001	Banana	cytosol	42.57	40.76
GSMUA_Achr8P25750_001	Banana	cytosol	39.6	36.2
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	44.06	35.6

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr2G18340_001	EnsemblPlants:GSMUA_Achr2P18340_001	EnsemblPlants:GSMUA_Achr2T18340_001
UniProt:M0S925	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002965D43	:

Description

GTP-binding protein YPTM2 [Source:GMGC_GENE;Acc:GSMUA_Achr2G18340_001]

Coordinates

chr2:+:18760828..18764620

Molecular Weight (calculated)

22573.8 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.305

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLNEIDRYA SDSVNKLLVG NKCDLTANKV VSYETAKAFA DEIGIPFMET SAKNATNVEQ AFMAMTASIK DRMASQPAMN SSRPPTVQIR GQPVNQKSSC
201: CS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.