Factsheet for Solyc05g053940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
endoplasmic reticulum 4
golgi 4
extracellular 3
vacuole 3
plasma membrane 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid, unclear
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	100.0	100.0
GSMUA_Achr11P...	Banana	cytosol	92.12	92.12
GSMUA_Achr8P15030_001	Banana	cytosol	91.63	91.63
Solyc08g078070.2.1	Tomato	nucleus	90.64	90.64
KRH01059	Soybean	endoplasmic reticulum	90.15	90.59
GSMUA_Achr2P18340_001	Banana	plasma membrane	90.15	90.59
KRH40178	Soybean	endoplasmic reticulum	89.66	90.1
KRH66494	Soybean	endoplasmic reticulum	89.16	89.16
Solyc01g090170.2.1	Tomato	unclear	89.16	89.16
Solyc05g052070.2.1	Tomato	unclear	88.67	88.67
Bra024956.1-P	Field mustard	cytosol	88.18	88.61
Bra022113.1-P	Field mustard	cytosol	88.18	88.61
Bra017497.1-P	Field mustard	cytosol	88.18	88.61
AT1G02130.1	Thale cress	cytosol	88.18	88.18
Os02t0653800-01	Rice	plasma membrane	88.18	88.18
Os01t0179700-01	Rice	plasma membrane	88.18	88.18
TraesCS3A01G056600.1	Wheat	cytosol	87.68	87.68
TraesCS3B01G070300.2	Wheat	cytosol	87.68	87.68
TraesCS3D01G056600.1	Wheat	plastid	87.68	87.68
Bra012658.1-P	Field mustard	cytosol	87.19	87.62
EES07529	Sorghum	cytosol	87.19	87.19
TraesCS3D01G056500.1	Wheat	golgi	86.21	86.21
TraesCS3A01G056500.1	Wheat	cytosol	84.73	84.73
HORVU3Hr1G010800.8	Barley	cytosol	66.5	82.82
KRH48822	Soybean	cytosol, endoplasmic reticulum	62.56	80.38
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	89.66	80.18
TraesCS3A01G056800.1	Wheat	cytosol	74.38	79.89
CDY38055	Canola	cytosol	88.18	75.53
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	74.38	74.75
TraesCS3A01G056900.1	Wheat	mitochondrion	56.16	68.26
GSMUA_Achr7P06570_001	Banana	cytosol	88.67	65.45
VIT_15s0021g01410.t01	Wine grape	cytosol	64.53	63.9
Zm00001d051336_P001	Maize	plastid	84.73	63.24
Solyc06g005350.2.1	Tomato	cytosol	44.83	63.19
Bra040162.1-P	Field mustard	cytosol	84.73	62.77
HORVU3Hr1G010780.1	Barley	plasma membrane	86.21	62.72
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	91.13	61.46
TraesCS3A01G056700.1	Wheat	cytosol	73.4	58.43
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	62.07	58.33
Solyc09g010370.2.1	Tomato	extracellular, plastid	60.59	56.94
Solyc10g086350.1.1	Tomato	cytosol, nucleus	60.59	56.94
Solyc04g011360.2.1	Tomato	plastid	60.59	56.94
Solyc02g093530.2.1	Tomato	plastid	49.26	47.39
Solyc12g011130.1.1	Tomato	cytosol	47.29	45.5
Solyc10g007700.2.1	Tomato	plastid	47.29	45.5
Zm00001d017456_P003	Maize	cytosol	85.22	43.14
Solyc07g056150.2.1	Tomato	cytosol, nucleus	44.83	42.92
Solyc06g060210.1.1	Tomato	cytosol	37.93	37.93

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000139	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794	GO:GO:0006810	GO:GO:0006888
GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	UniProt:K4C273	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc05g053940.2	EnsemblPlants:Solyc05g053940.2.1	TIGRFAMs:TIGR00231	UniParc:UPI000276670F	:	:

Description

No Description!

Coordinates

chr5:-:63958473..63963310

Molecular Weight (calculated)

22406.4 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.264

Length

203 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DTYLESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDV TDQESFNNVK
101: QWLSEIDRYA SDNVNKILVG NKADLTANRV VSYETAKAFA DEIGIPFLET SAKDATNVEQ AFMAMTGAIK NRMASQPASN SAKPPTVNIR GQPVTQSGGC
201: CSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.