Factsheet for Solyc07g056150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054721	Potato	cytosol	77.36	99.39
Solyc10g007700.2.1	Tomato	plastid	93.87	94.31
VIT_00s1506g00010.t01	Wine grape	cytosol	66.04	93.96
Solyc12g011130.1.1	Tomato	cytosol	92.45	92.89
Solyc02g093530.2.1	Tomato	plastid	81.6	81.99
GSMUA_Achr4P01720_001	Banana	endoplasmic reticulum, extracellular	89.15	75.6
TraesCS5B01G255300.1	Wheat	cytosol	62.26	70.59
TraesCS5A01G256000.1	Wheat	cytosol	63.21	65.37
Os10t0208200-00	Rice	cytosol	63.68	63.68
TraesCS5D01G264100.1	Wheat	cytosol	62.74	62.74
HORVU5Hr1G071600.3	Barley	cytosol	59.91	59.07
Solyc06g060210.1.1	Tomato	cytosol	52.36	54.68
TraesCS2B01G542700.1	Wheat	cytosol	48.58	46.82
Solyc05g052070.2.1	Tomato	unclear	44.34	46.31
Solyc08g078070.2.1	Tomato	nucleus	43.87	45.81
Solyc01g090170.2.1	Tomato	unclear	43.4	45.32
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	42.92	44.83
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	41.04	43.07
Solyc06g005350.2.1	Tomato	cytosol	29.25	43.06
Solyc09g010370.2.1	Tomato	extracellular, plastid	40.57	39.81
Solyc04g011360.2.1	Tomato	plastid	40.57	39.81
Solyc10g086350.1.1	Tomato	cytosol, nucleus	40.09	39.35
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	40.09	39.35

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0030100	UniProt:K4CGE8	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc07g056150.2	EnsemblPlants:Solyc07g056150.2.1	TIGRFAMs:TIGR00231
UniParc:UPI000276AE6E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:63994885..63999176

Molecular Weight (calculated)

23191.7 Da

IEP (calculated)

7.449

GRAVY (calculated)

-0.194

Length

212 amino acids

Sequence
(BLAST)

001: MVYTLPLGLI RSTDILGVGK SCLLLQFTDK RFQPVHDLTI GVEFGARMIT IDNKPIKLQI WDTAGQESFR SITRSYYRGA AGALLVYDIT RRETFNHLAS
101: WLEDARQHAN ANMTIMLIGN KCDLAHRRAV STEEGEQFAK ENGLIFMEAS AKTAQNVEEA FIRTASTIYK KIQDGVFDVS NESYGIKVGY GGIPGPSGGR
201: DGAASQGGGC CT

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.