Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g093530.2.1 | Tomato | plastid | 58.13 | 55.92 |
| Solyc10g007700.2.1 | Tomato | plastid | 58.13 | 55.92 |
| Solyc12g011130.1.1 | Tomato | cytosol | 57.64 | 55.45 |
| Solyc07g056150.2.1 | Tomato | cytosol, nucleus | 54.68 | 52.36 |
| Solyc06g005350.2.1 | Tomato | cytosol | 29.06 | 40.97 |
| Solyc01g103370.2.1 | Tomato | endoplasmic reticulum | 39.9 | 40.1 |
| Solyc05g052070.2.1 | Tomato | unclear | 39.9 | 39.9 |
| Solyc08g078070.2.1 | Tomato | nucleus | 39.41 | 39.41 |
| Solyc05g053940.2.1 | Tomato | nucleus, plastid, unclear | 37.93 | 37.93 |
| Solyc01g090170.2.1 | Tomato | unclear | 37.44 | 37.44 |
| Solyc04g011360.2.1 | Tomato | plastid | 39.41 | 37.04 |
| Solyc09g010370.2.1 | Tomato | extracellular, plastid | 38.92 | 36.57 |
| Solyc11g073050.1.1 | Tomato | endoplasmic reticulum | 38.42 | 36.11 |
| Solyc10g086350.1.1 | Tomato | cytosol, nucleus | 37.93 | 35.65 |
Protein Annotations
| MapMan:22.8.1.2 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0030100 | UniProt:K4C6K2 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF843 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SMART:SM00177 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | EnsemblPlantsGene:Solyc06g060210.1 | EnsemblPlants:Solyc06g060210.1.1 |
| TIGRFAMs:TIGR00231 | UniParc:UPI000276614B | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:38174983..38175594
Molecular Weight (calculated)
23065.7 Da
IEP (calculated)
8.755
GRAVY (calculated)
-0.357
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYNYMFKFI IVGETGVGKT CLLYQLTSAR FKPVYEVTIG AEFGSRTITV DQKPIKLQIW DTAGQEKFRS LTRYFYRGAV GALLVYDVTK RQTFQQLPNW
101: LEDLRKHGDE KLTVMVVGNK CDLDEETRAV SKEEGEEFAK RNKCLFMEVS ARTAKNVEAA FGSAAEEICE KIGKGDFGTV EGYKGITIGN WRGKSKRFYS
201: CCF
101: LEDLRKHGDE KLTVMVVGNK CDLDEETRAV SKEEGEEFAK RNKCLFMEVS ARTAKNVEAA FGSAAEEICE KIGKGDFGTV EGYKGITIGN WRGKSKRFYS
201: CCF
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Arabidopsis Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.