Factsheet for Solyc10g086350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049296	Potato	cytosol	97.69	97.69
Solyc09g010370.2.1	Tomato	extracellular, plastid	94.44	94.44
Solyc06g005350.2.1	Tomato	cytosol	62.5	93.75
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	91.2	91.2
VIT_08s0040g02490.t01	Wine grape	cytosol	90.74	90.74
Solyc04g011360.2.1	Tomato	plastid	90.28	90.28
Os07t0239400-01	Rice	plasma membrane	89.81	90.23
Os03t0819900-01	Rice	plasma membrane	89.35	90.19
AT3G53610.3	Thale cress	cytosol	89.81	89.81
Zm00001d038380_P001	Maize	extracellular, plasma membrane	89.35	89.77
Zm00001d010538_P005	Maize	cytosol	89.35	89.77
EES19652	Sorghum	cytosol	89.35	89.77
EER93195	Sorghum	cytosol	88.89	89.72
GSMUA_AchrUn_...	Banana	cytosol	89.35	89.35
GSMUA_Achr9P03220_001	Banana	cytosol	89.35	89.35
Os05t0461300-01	Rice	plastid	89.35	89.35
GSMUA_Achr6P34270_001	Banana	cytosol	89.35	89.35
GSMUA_Achr11P...	Banana	cytosol	89.35	89.35
GSMUA_Achr10P...	Banana	cytosol	89.35	89.35
Zm00001d034638_P001	Maize	cytosol	88.89	89.3
GSMUA_Achr10P...	Banana	cytosol	88.89	88.89
TraesCS5B01G489300.1	Wheat	golgi	87.5	88.32
TraesCS1A01G286200.1	Wheat	cytosol	87.04	87.85
TraesCS1B01G295600.1	Wheat	cytosol	87.04	87.85
TraesCS1D01G285200.1	Wheat	cytosol	87.04	87.85
TraesCS5A01G476400.1	Wheat	cytosol	87.04	87.85
TraesCS3A01G356000.3	Wheat	plastid	87.5	87.5
GSMUA_Achr8P02620_001	Banana	cytosol	87.5	87.5
TraesCS5D01G489700.1	Wheat	cytosol	86.57	87.38
TraesCS3B01G388900.1	Wheat	cytosol	87.04	87.04
OQU88745	Sorghum	cytosol	89.81	85.84
HORVU1Hr1G072070.1	Barley	cytosol	83.33	80.0
TraesCS3D01G350000.3	Wheat	cytosol	87.04	78.99
CDY07577	Canola	cytosol	89.81	72.66
CDY52746	Canola	cytosol	89.35	71.75
Bra003149.1-P	Field mustard	cytosol	89.35	71.75
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.02	67.57
HORVU3Hr1G086830.7	Barley	cytosol	75.0	61.13
Solyc08g078070.2.1	Tomato	nucleus	57.41	61.08
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	56.94	60.59
Solyc05g052070.2.1	Tomato	unclear	55.56	59.11
Solyc01g090170.2.1	Tomato	unclear	55.09	58.62
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	53.24	56.93
Solyc02g093530.2.1	Tomato	plastid	42.59	43.6
Solyc12g011130.1.1	Tomato	cytosol	41.2	42.18
Solyc10g007700.2.1	Tomato	plastid	40.74	41.71
Solyc07g056150.2.1	Tomato	cytosol, nucleus	39.35	40.09
Solyc06g060210.1.1	Tomato	cytosol	35.65	37.93

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	UniProt:K4D467	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF642	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc10g086350.1	EnsemblPlants:Solyc10g086350.1.1	TIGRFAMs:TIGR00231	UniParc:UPI00027694C5	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:65205566..65210133

Molecular Weight (calculated)

23867.3 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.349

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDHLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIKTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNMNVQEAF FSIARDIKQR IAESDSKAEP QTIKINQPDQ
201: TAGGIQSAQK SACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.