Factsheet for Os03t0819900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 18557835
plastid: 21433289
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0196500-01
Os01t0269100-01
Os02t0245100-01	peroxisome
Os05t0200280-01
Os06t0107000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	Os02t0245100-01	AT1G29260.1	23297417
AT3G46060.1	Os01t0269100-01	AT3G06540.1	21798944
AT3G46060.1	Os01t0196500-01	AT3G13720.1	21798944
AT3G46060.1	Os05t0200280-01	AT3G13720.1	21798944
AT3G46060.1	Os06t0107000-01	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034638_P001	Maize	cytosol	99.07	98.6
EER93195	Sorghum	cytosol	98.6	98.6
CDY72056	Canola	cytosol	56.07	96.0
Os07t0239400-01	Rice	plasma membrane	96.26	95.81
Solyc06g005350.2.1	Tomato	cytosol	64.02	95.14
Os05t0461300-01	Rice	plastid	93.93	93.06
GSMUA_Achr10P...	Banana	cytosol	93.93	93.06
GSMUA_Achr9P03220_001	Banana	cytosol	93.93	93.06
GSMUA_AchrUn_...	Banana	cytosol	93.46	92.59
GSMUA_Achr6P34270_001	Banana	cytosol	92.99	92.13
GSMUA_Achr11P...	Banana	cytosol	92.99	92.13
PGSC0003DMT400040138	Potato	cytosol	92.99	92.13
TraesCS5B01G489300.1	Wheat	golgi	91.59	91.59
KRH29838	Soybean	endoplasmic reticulum	91.59	91.59
TraesCS5A01G476400.1	Wheat	cytosol	91.59	91.59
KRH01606	Soybean	endoplasmic reticulum	92.06	91.2
KRH70501	Soybean	endoplasmic reticulum	92.06	91.2
CDY30926	Canola	cytosol	92.06	91.2
PGSC0003DMT400049296	Potato	cytosol	92.06	91.2
VIT_13s0019g00520.t01	Wine grape	extracellular	92.06	91.2
Bra019475.1-P	Field mustard	cytosol	92.06	91.2
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	92.06	91.2
KRH24835	Soybean	cytosol	91.12	91.12
TraesCS5D01G489700.1	Wheat	cytosol	91.12	91.12
CDX86045	Canola	cytosol	91.59	90.74
VIT_08s0040g02490.t01	Wine grape	cytosol	91.59	90.74
GSMUA_Achr8P02620_001	Banana	cytosol	91.12	90.28
AT3G46060.1	Thale cress	cytosol	91.12	90.28
AT5G59840.1	Thale cress	cytosol	91.12	90.28
PGSC0003DMT400022823	Potato	cytosol	91.12	90.28
PGSC0003DMT400071317	Potato	cytosol	91.12	90.28
Solyc09g010370.2.1	Tomato	extracellular, plastid	91.12	90.28
CDX68365	Canola	cytosol	90.65	89.81
GSMUA_Achr10P...	Banana	cytosol	90.65	89.81
Solyc04g011360.2.1	Tomato	plastid	90.65	89.81
VIT_06s0004g04200.t01	Wine grape	cytosol	90.65	89.81
CDX77855	Canola	cytosol	90.65	89.81
CDY71506	Canola	cytosol	90.65	89.81
PGSC0003DMT400008917	Potato	cytosol	90.65	89.81
KRH36193	Soybean	endoplasmic reticulum, extracellular	90.65	89.81
KRH10292	Soybean	cytosol	90.19	89.77
KRH23030	Soybean	endoplasmic reticulum	90.19	89.77
Solyc10g086350.1.1	Tomato	cytosol, nucleus	90.19	89.35
Bra002527.1-P	Field mustard	cytosol	90.19	89.35
CDY31592	Canola	cytosol	90.19	89.35
AT3G53610.3	Thale cress	cytosol	89.72	88.89
Bra006690.1-P	Field mustard	cytosol	89.72	88.89
KRG90563	Soybean	cytosol	89.72	88.89
Bra033830.1-P	Field mustard	cytosol	79.91	88.6
CDX88725	Canola	cytosol	89.25	88.43
CDX88726	Canola	cytosol	89.25	88.43
CDX80224	Canola	cytosol	87.85	88.26
Bra020282.1-P	Field mustard	cytosol	86.45	85.65
CDY09249	Canola	cytosol	85.98	85.19
CDY34032	Canola	cytosol	53.27	77.55
CDY70243	Canola	cytosol	52.8	74.34
CDY07577	Canola	cytosol	90.19	72.28
Bra003149.1-P	Field mustard	cytosol	89.72	71.38
CDY52746	Canola	cytosol	89.72	71.38
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	85.98	71.04
CDX94925	Canola	cytosol	53.74	70.12
CDX99131	Canola	cytosol	92.06	63.96
Os01t0179700-01	Rice	plasma membrane	58.41	61.58
Os02t0653800-01	Rice	plasma membrane	58.41	61.58
Os01t0558600-01	Rice	plasma membrane	57.01	60.4
Os07t0195100-01	Rice	plasma membrane	74.77	58.61
Bra038265.1-P	Field mustard	cytosol	91.59	52.13
Os02t0586400-01	Rice	plasma membrane	41.59	42.38
Os04t0470100-01	Rice	plasma membrane	40.19	40.76
Os10t0208200-00	Rice	cytosol	37.38	37.74

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EntrezGene:4334590	ProteinID:AAO65869.1	ProteinID:ABF99579.1	EMBL:AK111912
EMBL:AK112029	EMBL:AY579410	ProteinID:BAF13630.1	ProteinID:BAS87079.1	ProteinID:EEE60188.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009306	GO:GO:0009987	GO:GO:0016787	GO:GO:0017157
EnsemblPlantsGene:Os03g0819900	EnsemblPlants:Os03t0819900-01	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF646	UniProt:Q84TA8	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00000560E5	RefSeq:XP_015627857.1	SEG:seg	:	:	:

Description

small GTP-binding protein OsRab8A5Similar to RAB8C. (Os03t0819900-01)

Coordinates

chr3:+:34407093..34410374

Molecular Weight (calculated)

23780.2 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.339

Length

214 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEQVF FSIARDIKQR LSETDSKPED RTIKIKSEGE
201: AEAAAAQKSA CCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.