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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0196500-01
Os01t0253300-01
Os01t0254000-01
Os01t0338000-01
Os01t0662600-02
Os01t0827400-01
Os01t0851300-01
Os01t0896400-01
Os02t0655500-01
Os02t0655600-01
Os03t0100900-01
Os03t0206900-01
Os03t0666200-01
Os04t0367400-02
Os04t0450200-01
Os04t0496300-01
Os04t0548000-01
Os04t0594400-01
Os04t0624800-01
Os04t0641400-02
Os05t0128700-00
Os05t0153901-00
Os05t0200280-01
Os05t0474400-01
Os05t0500400-01
Os05t0507000-01
Os05t0564601-00
Os05t0568100-01
Os06t0107000-01
Os06t0112400-01
Os06t0213200-01
Os06t0225000-00
Os06t0360300-01
Os07t0138100-01
Os08t0143700-01
Os08t0411200-01
Os09t0266000-02
Os11t0107600-01
Os12t0107600-00
Os12t0505950-00
Os12t0560300-01
Os12t0580700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G25660.1 Os04t0641400-02 AT1G14340.1 21798944
AT4G25660.1 Os03t0206900-01 AT1G49850.1 21798944
AT4G25660.1 Os12t0580700-01 AT1G49850.1 21798944
AT4G25660.1 Os01t0196500-01 AT1G55190.1 21798944
AT4G25660.1 Os05t0200280-01 AT1G55190.1 21798944
AT4G25660.1 Os09t0266000-02 AT1G71480.1 21798944
AT4G25660.1 Os08t0411200-01 AT1G78140.1 21798944
AT4G25660.1 Os03t0666200-01 AT2G30880.1 21798944
AT4G25660.1 Os05t0128700-00 AT2G30880.1 21798944
AT4G25660.1 Os05t0153901-00 AT2G30880.1 21798944
AT4G25660.1 Os07t0138100-01 AT2G30880.1 21798944
AT4G25660.1 Os12t0505950-00 AT2G30880.1 21798944
AT4G25660.1 Os06t0360300-01 AT2G34460.1 21798944
AT4G25660.1 Os01t0827400-01 AT2G38360.1 21798944
AT4G25660.1 Os05t0474400-01 AT2G38360.1 21798944
AT4G25660.1 Os11t0107600-01 AT2G38360.1 21798944
AT4G25660.1 Os12t0107600-00 AT2G38360.1 21798944
AT4G25660.1 Os01t0196500-01 AT3G13710.1 21798944
AT4G25660.1 Os05t0200280-01 AT3G13710.1 21798944
AT4G25660.1 Os05t0500400-01 AT3G20680.1 21798944
AT4G25660.1 Os01t0851300-01 AT3G54120.1 21798944
AT4G25660.1 Os04t0367400-02 AT3G54120.1 21798944
AT4G25660.1 Os01t0254000-01 AT4G02080.1 21798944
AT4G25660.1 Os01t0338000-01 AT4G02080.1 21798944
AT4G25660.1 Os06t0225000-00 AT4G02080.1 21798944
AT4G25660.1 Os12t0560300-01 AT4G02080.1 21798944
AT4G25660.1 Os01t0253300-01 AT4G02150.1 21798944
AT4G25660.1 Os04t0594400-01 AT4G17720.1 21798944
AT4G25660.1 Os04t0624800-01 AT4G17720.1 21798944
AT4G25660.1 Os06t0112400-01 AT4G17720.1 21798944
AT4G25660.1 Os01t0662600-02 AT4G22220.1 21798944
AT4G25660.1 Os05t0568100-01 AT4G22220.1 21798944
AT4G25660.1 Os06t0107000-01 AT4G25660.1 21798944
AT4G25660.1 Os04t0450200-01 AT5G09450.1 21798944
AT4G25660.1 Os01t0896400-01 AT5G16250.1 21798944
AT4G25660.1 Os04t0496300-01 AT5G16250.1 21798944
AT4G25660.1 Os05t0507000-01 AT5G16250.1 21798944
AT4G25660.1 Os05t0564601-00 AT5G16250.1 21798944
AT4G25660.1 Os02t0655500-01 AT5G47310.1 21798944
AT4G25660.1 Os03t0100900-01 AT5G47310.1 21798944
AT4G25660.1 Os04t0548000-01 AT5G47310.1 21798944
AT4G25660.1 Os02t0655600-01 AT5G51180.1 21798944
AT4G25660.1 Os08t0143700-01 AT5G51180.1 21798944
AT4G25680.1 Os01t0254000-01 AT1G56330.1 21798944
AT4G25680.1 Os01t0338000-01 AT1G56330.1 21798944
AT4G25680.1 Os06t0225000-00 AT1G56330.1 21798944
AT4G25680.1 Os12t0560300-01 AT1G56330.1 21798944
AT4G25680.1 Os03t0666200-01 AT2G30880.1 21798944
AT4G25680.1 Os05t0128700-00 AT2G30880.1 21798944
AT4G25680.1 Os05t0153901-00 AT2G30880.1 21798944
AT4G25680.1 Os07t0138100-01 AT2G30880.1 21798944
AT4G25680.1 Os12t0505950-00 AT2G30880.1 21798944
AT4G25680.1 Os01t0827400-01 AT2G38360.1 21798944
AT4G25680.1 Os05t0474400-01 AT2G38360.1 21798944
AT4G25680.1 Os11t0107600-01 AT2G38360.1 21798944
AT4G25680.1 Os12t0107600-00 AT2G38360.1 21798944
AT4G25680.1 Os01t0196500-01 AT3G13710.1 21798944
AT4G25680.1 Os05t0200280-01 AT3G13710.1 21798944
AT4G25680.1 Os01t0196500-01 AT3G13720.1 21798944
AT4G25680.1 Os05t0200280-01 AT3G13720.1 21798944
AT4G25680.1 Os06t0107000-01 AT4G25660.1 21798944
AT4G25680.1 Os06t0107000-01 AT4G25680.1 21798944
AT4G25680.1 Os06t0213200-01 AT4G33350.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d045580_P001 Maize cytosol 70.74 71.27
EER87703 Sorghum cytosol 70.37 70.9
TraesCS7A01G019000.1 Wheat cytosol 73.33 67.35
TraesCSU01G065800.1 Wheat cytosol 72.96 66.55
TraesCS7D01G016100.1 Wheat nucleus 73.7 61.23
GSMUA_AchrUn_... Banana cytosol 52.96 57.66
HORVU7Hr1G002080.2 Barley cytosol 41.11 56.35
VIT_16s0050g01050.t01 Wine grape cytosol 50.0 55.56
KRH08874 Soybean cytosol 48.89 53.88
Os10t0533900-01 Rice cytosol, nucleus, peroxisome 48.89 53.66
KRH38387 Soybean cytosol 48.89 53.23
CDX94426 Canola cytosol 49.63 53.17
CDX89402 Canola cytosol 49.26 52.99
Bra013910.1-P Field mustard cytosol 49.26 52.99
Bra013908.1-P Field mustard cytosol 47.78 52.65
CDY66007 Canola cytosol 49.26 52.36
Bra010452.1-P Field mustard cytosol 49.26 52.36
CDX89404 Canola cytosol 47.41 52.24
CDX94429 Canola cytosol 47.04 51.84
AT4G25660.1 Thale cress cytosol 48.89 51.76
CDY49480 Canola cytosol 48.15 51.38
AT4G25680.1 Thale cress cytosol 47.41 50.79
KRH35244 Soybean cytosol, peroxisome, plastid 38.15 42.92
PGSC0003DMT400018924 Potato cytosol 33.33 42.45
Solyc02g082060.1.1 Tomato cytosol 32.59 41.31
Os04t0548000-01 Rice cytosol 19.63 25.6
Os02t0655500-01 Rice cytosol 18.15 24.02
Os06t0560400-01 Rice cytosol 18.89 23.61
Os03t0198500-01 Rice mitochondrion 21.48 23.48
Os03t0100900-01 Rice plastid 20.0 22.04
Os06t0182100-00 Rice plastid 20.74 21.37
Protein Annotations
EnsemblPlants:Os06t0107000-01EnsemblPlantsGene:Os06g0107000Gene3D:3.90.1720.30InterPro:PPPDE_domncoils:CoilPANTHER:PTHR12378
PANTHER:PTHR12378:SF18PFAM:PF05903ProteinID:BAS95757.1SEG:segSMART:SM01179UniParc:UPI0000E12639
UniProt:A0A0P0WS35MapMan:19.4.1.7::::
Description
OsSTA163Domain of unknown function DUF862, eukaryotic domain containing protein. (Os06t0107000-01)
Coordinates
chr6:+:450964..453729
Molecular Weight (calculated)
29139.5 Da
IEP (calculated)
4.451
GRAVY (calculated)
-0.539
Length
270 amino acids
Sequence
(BLAST)
001: GEEEEGRQVQ EVVAHVYDVA SSGSSEGGGG GTAILHVNRF FKDAIGLGGI FHTAIQVYGD EEWSFGYCEN GTGVFSCPPC KNPMYTYRES IVLGKTTCSI
101: FTVNQILREL SWKWPGGSYE LLSRNCNHFC NTFCEKLDVP KLPAWVNRFA NAGDAALEVA ENTAEKLKQA KKDIAGACKA ATTYLTGASS SSPSNADDSG
201: GSTNSSLFEG TWLRSIIGIS MKPSRSLMCS DSSDSSDDEK SEDERESDCQ QPSGDQIEEK KDATQEQAGK
Best Arabidopsis Sequence Match ( AT4G25660.1 )
(BLAST)
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.