Factsheet for Os01t0662600-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

mitochondrion: 19396402

gfp PMID: 19396402 doi

D Tsugama, S Liu, T Takano

Asian Natural Environmental Science Center, The University of Tokyo, 1-1-1 Midori-cho, Nishitokyo-shi, Tokyo, 188-0002, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0232400-01
Os06t0107000-01
Os12t0456200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	Os02t0232400-01	AT2G42790.1	21798944
AT4G22220.1	Os06t0107000-01	AT4G25680.1	21798944
AT4G22220.1	Os12t0456200-01	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P22070_001	Banana	cytosol	50.29	85.15
TraesCS3D01G240900.1	Wheat	mitochondrion	85.38	83.43
TraesCS3A01G240500.1	Wheat	mitochondrion	85.38	83.43
TraesCS3B01G268800.1	Wheat	mitochondrion	85.96	83.05
Zm00001d043971_P001	Maize	mitochondrion	85.38	81.11
EES03388	Sorghum	mitochondrion	83.63	79.01
KRH57077	Soybean	mitochondrion	74.27	76.97
KRH03283	Soybean	mitochondrion	74.27	76.97
Os05t0568100-01	Rice	mitochondrion	77.19	76.74
PGSC0003DMT400046740	Potato	mitochondrion	73.68	75.9
Solyc03g112900.2.1	Tomato	mitochondrion	73.68	75.9
Bra020855.1-P	Field mustard	mitochondrion	67.84	70.73
Bra013601.1-P	Field mustard	mitochondrion	65.5	70.44
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	47.37	70.43
Solyc07g007450.2.1	Tomato	mitochondrion	67.25	70.12
KRH19966	Soybean	mitochondrion	70.18	69.77
KRH54391	Soybean	mitochondrion	70.18	69.77
AT4G22220.1	Thale cress	mitochondrion	65.5	67.07
Zm00001d011514_P001	Maize	mitochondrion	76.61	65.5
AT3G01020.1	Thale cress	mitochondrion	61.4	64.42
AT4G04080.1	Thale cress	mitochondrion	59.65	59.65
Zm00001d030959_P001	Maize	extracellular, mitochondrion	39.77	58.62
PGSC0003DMT400078947	Potato	mitochondrion	67.25	52.27
PGSC0003DMT400035008	Potato	mitochondrion	28.66	31.21

Protein Annotations

Gene3D:3.90.1010.10	EntrezGene:4327858	MapMan:7.11.2.1.2	EMBL:AK062234	EMBL:AK098887	ProteinID:BAB91740.1
ProteinID:BAF05697.1	ProteinID:BAS73546.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0006879	GO:GO:0008150	GO:GO:0008152	GO:GO:0008198	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016226	GO:GO:0016740	GO:GO:0019538	GO:GO:0019725
GO:GO:0036455	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	GO:GO:0051539	GO:GO:0097428
InterPro:ISC_FeS_clus_asmbl_IscU	InterPro:NIF_FeS_clus_asmbl_NifU_N	EnsemblPlantsGene:Os01g0662600	EnsemblPlants:Os01t0662600-02	PFAM:PF01592	PANTHER:PTHR10093
PANTHER:PTHR10093:SF8	UniProt:Q8LR34	SUPFAM:SSF82649	TIGRFAMs:TIGR01999	UniParc:UPI00000A7E67	RefSeq:XP_015621640.1
SEG:seg	:	:	:	:	:

Description

IRON-SULFUR CLUSTER PROTEIN 6Similar to NifU-like protein. (Os01t0662600-01);Similar to NifU-like protein. (Os01t0662600-02);Similar to nifU-like N-terminal domain-containing protein. (Os01t0662600-04);Non-protein coding transcript. (Os01t0662600-05)

Coordinates

chr1:-:27047492..27050427

Molecular Weight (calculated)

17944.6 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.169

Length

171 amino acids

Sequence
(BLAST)

001: MLRAGGRRLL APGLRRVLGG GAAAPVAVGG AKAYHERVVD HYENPRNVGS FENDDPSVGT GLVGAPACGD VMKLQIRVDE SSGKIVDACF KTFGCGSAIA
101: SSSVATEWVK GKQMEEVVTI KNTEIAKHLS LPPVKLHCSM LAEDAIKAAV KDYEAKKAKL AQKGEEKAAE A

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.