Factsheet for PGSC0003DMT400078947

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400020128
PGSC0003DMT400044692
PGSC0003DMT400054981

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400018924	AT4G25680.1	21798944
AT4G22220.1	PGSC0003DMT400054981	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007450.2.1	Tomato	mitochondrion	70.0	93.9
PGSC0003DMT400046740	Potato	mitochondrion	62.27	82.53
GSMUA_Achr6P22070_001	Banana	cytosol	34.55	75.25
GSMUA_Achr6P09070_001	Banana	mitochondrion	57.27	74.12
VIT_01s0127g00450.t01	Wine grape	mitochondrion	42.73	73.44
GSMUA_Achr10P...	Banana	cytosol	35.0	73.33
KRH03283	Soybean	mitochondrion	54.55	72.73
KRH57077	Soybean	mitochondrion	54.09	72.12
Bra013601.1-P	Field mustard	mitochondrion	51.82	71.7
CDX82924	Canola	mitochondrion	50.91	70.89
CDX94542	Canola	cytosol	34.55	70.37
KRH54391	Soybean	mitochondrion	55.0	70.35
CDX79137	Canola	mitochondrion	50.45	69.81
KRH19966	Soybean	mitochondrion	53.64	68.6
TraesCS3D01G240900.1	Wheat	mitochondrion	54.55	68.57
CDX76383	Canola	mitochondrion	50.91	68.29
Bra020855.1-P	Field mustard	mitochondrion	50.91	68.29
CDY27446	Canola	mitochondrion	50.91	68.29
TraesCS3A01G240500.1	Wheat	mitochondrion	54.09	68.0
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	35.45	67.83
TraesCS3B01G268800.1	Wheat	mitochondrion	54.55	67.8
Os05t0568100-01	Rice	mitochondrion	52.73	67.44
Os01t0662600-02	Rice	mitochondrion	52.27	67.25
AT4G22220.1	Thale cress	mitochondrion	50.91	67.07
TraesCS1B01G436500.1	Wheat	mitochondrion	50.0	65.87
Zm00001d043971_P001	Maize	mitochondrion	53.64	65.56
TraesCS1D01G414700.1	Wheat	mitochondrion	50.0	65.48
EES03388	Sorghum	mitochondrion	53.18	64.64
TraesCS1A01G406300.1	Wheat	mitochondrion	49.55	63.37
AT3G01020.1	Thale cress	mitochondrion	45.91	61.96
AT4G04080.1	Thale cress	mitochondrion	46.36	59.65
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	50.0	57.59
Zm00001d011514_P001	Maize	mitochondrion	49.09	54.0
Zm00001d029638_P001	Maize	cytosol	19.09	53.16
Zm00001d043816_P001	Maize	cytosol, plastid	18.64	51.9
KXG22553	Sorghum	plastid	50.91	50.22
CDY68710	Canola	mitochondrion, peroxisome	25.45	49.12
Zm00001d030959_P001	Maize	extracellular, mitochondrion	25.45	48.28
PGSC0003DMT400035008	Potato	mitochondrion	25.0	35.03
HORVU3Hr1G059830.7	Barley	mitochondrion	21.36	18.58

Protein Annotations

EnsemblPlants:PGSC0003DMT400078947	EnsemblPlantsGene:PGSC0003DMG400030721	Gene3D:3.90.1010.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016226
GO:GO:0051536	InterPro:NIF_FeS_clus_asmbl_NifU_N	ncoils:Coil	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	PFAM:PF01592
PGSC:PGSC0003DMG400030721	SUPFAM:SSF82649	UniParc:UPI0002964974	UniProt:M1D101	MapMan:7.11.2.1.2	:

Description

Iron-sulfer cluster scaffold protein ISU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400030721]

Coordinates

chr7:+:3390685..3393974

Molecular Weight (calculated)

24540.7 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.335

Length

220 amino acids

Sequence
(BLAST)

001: MLRHVGNRIP GLGQRPSSAA VAQGVFQRLY HERVVDHYNN PRNVGSFDKN DPTVGTGLVG APACGDVMKL QIKVDEKTGK ITDACFKTFG CGSAIASSSL
101: ATEWVKGRTM EEALSIKNTL KRLRLNCLEF KAFYNPLFVL GFDPVLKRVI YERIDAHMKD LVNLKFSTRR EIAKHLFLPP QKIHCSMLAE DAIRAAKKDY
201: EAKQAKFNEN AENASTEKAV

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.