Factsheet for HORVU1Hr1G089730.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G030280.2
HORVU5Hr1G099820.5
HORVU7Hr1G002080.2
HORVU7Hr1G043340.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	HORVU0Hr1G030280.2	AT2G42790.1	21798944
AT4G22220.1	HORVU5Hr1G099820.5	AT2G42790.1	21798944
AT4G22220.1	HORVU7Hr1G002080.2	AT4G25680.1	21798944
AT4G22220.1	HORVU7Hr1G043340.3	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G436500.1	Wheat	mitochondrion	74.35	85.03
TraesCS1D01G414700.1	Wheat	mitochondrion	74.35	84.52
TraesCS1A01G406300.1	Wheat	mitochondrion	74.87	83.14
Os05t0568100-01	Rice	mitochondrion	68.59	76.16
Solyc03g112900.2.1	Tomato	mitochondrion	62.3	71.69
KRH57077	Soybean	mitochondrion	61.78	71.52
PGSC0003DMT400046740	Potato	mitochondrion	61.78	71.08
KRH03283	Soybean	mitochondrion	60.73	70.3
Bra013601.1-P	Field mustard	mitochondrion	58.12	69.81
KRH54391	Soybean	mitochondrion	61.78	68.6
Solyc07g007450.2.1	Tomato	mitochondrion	58.64	68.29
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	40.84	67.83
Bra020855.1-P	Field mustard	mitochondrion	58.12	67.68
KRH19966	Soybean	mitochondrion	60.21	66.86
AT4G22220.1	Thale cress	mitochondrion	57.59	65.87
AT3G01020.1	Thale cress	mitochondrion	51.83	60.74
AT4G04080.1	Thale cress	mitochondrion	53.4	59.65
KXG22553	Sorghum	plastid	69.63	59.64
HORVU2Hr1G019850.37	Barley	mitochondrion	52.36	59.52
PGSC0003DMT400078947	Potato	mitochondrion	57.59	50.0
PGSC0003DMT400035008	Potato	mitochondrion	25.13	30.57
HORVU3Hr1G059830.7	Barley	mitochondrion	27.23	20.55

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	UniProt:A0A287GNB6	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	EnsemblPlantsGene:HORVU1Hr1G089730	EnsemblPlants:HORVU1Hr1G089730.1
InterPro:ISC_FeS_clus_asmbl_IscU	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	SUPFAM:SSF82649
TIGRFAMs:TIGR01999	UniParc:UPI000B465AC0	SEG:seg	:	:	:

Description

Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A287GNB6]

Coordinates

chrchr1H:+:544734788..544736482

Molecular Weight (calculated)

20043.8 Da

IEP (calculated)

8.627

GRAVY (calculated)

-0.266

Length

191 amino acids

Sequence
(BLAST)

001: LRATTRSETD YSTAKREPTH ASGDHPIAIM LRAAGKRLVG AAAASAGDSS SSGLGAVAAR RGYHERVVDH YSNPRNVGAF DKDDADVGTG LVGAPACGDV
101: MKMQIRVDKA SGRIVDACFK TFGCGSAIAS SSVATEWVKG KQMEEVVAIK NTEIAKHLSL PPVKLHCSML AEDAIKAAVK DYEAKKAKAD E

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.