CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98876
KRH08874
KRH14452
KRH32887
KRH35244
KRH38387
KRH46090
KRH72132
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	KRG98876	AT2G42790.1	21798944
AT4G22220.1	KRH14452	AT2G42790.1	21798944
AT4G22220.1	KRH46090	AT2G42790.1	21798944
AT4G22220.1	KRH73702	AT2G42790.1	21798944
AT4G22220.1	KRH08874	AT4G25680.1	21798944
AT4G22220.1	KRH35244	AT4G25680.1	21798944
AT4G22220.1	KRH38387	AT4G25680.1	21798944
AT4G22220.1	KRH32887	AT5G06410.1	21798944
AT4G22220.1	KRH72132	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57077	Soybean	mitochondrion	95.15	95.15
KRH54391	Soybean	mitochondrion	84.85	81.4
KRH19966	Soybean	mitochondrion	83.64	80.23
GSMUA_Achr6P22070_001	Banana	cytosol	49.09	80.2
GSMUA_Achr10P...	Banana	cytosol	50.91	80.0
PGSC0003DMT400046740	Potato	mitochondrion	78.18	77.71
Solyc03g112900.2.1	Tomato	mitochondrion	77.58	77.11
CDX76383	Canola	mitochondrion	76.36	76.83
CDX79137	Canola	mitochondrion	73.94	76.73
CDX82924	Canola	mitochondrion	73.33	76.58
GSMUA_Achr6P09070_001	Banana	mitochondrion	78.79	76.47
Bra020855.1-P	Field mustard	mitochondrion	75.76	76.22
Bra013601.1-P	Field mustard	mitochondrion	73.33	76.1
CDY27446	Canola	mitochondrion	75.15	75.61
CDX94542	Canola	cytosol	49.09	75.0
Os01t0662600-02	Rice	mitochondrion	76.97	74.27
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	51.52	73.91
VIT_01s0127g00450.t01	Wine grape	mitochondrion	56.97	73.44
AT4G22220.1	Thale cress	mitochondrion	73.94	73.05
TraesCS3D01G240900.1	Wheat	mitochondrion	75.76	71.43
Solyc07g007450.2.1	Tomato	mitochondrion	70.91	71.34
TraesCS3A01G240500.1	Wheat	mitochondrion	75.15	70.86
TraesCS3B01G268800.1	Wheat	mitochondrion	75.76	70.62
Zm00001d043971_P001	Maize	mitochondrion	75.76	69.44
TraesCS1D01G414700.1	Wheat	mitochondrion	70.3	69.05
Os05t0568100-01	Rice	mitochondrion	71.52	68.6
TraesCS1B01G436500.1	Wheat	mitochondrion	69.09	68.26
EES03388	Sorghum	mitochondrion	74.55	67.96
TraesCS1A01G406300.1	Wheat	mitochondrion	69.09	66.28
AT4G04080.1	Thale cress	mitochondrion	68.48	66.08
AT3G01020.1	Thale cress	mitochondrion	63.64	64.42
Zm00001d029638_P001	Maize	cytosol	29.7	62.03
Zm00001d043816_P001	Maize	cytosol, plastid	29.09	60.76
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	70.3	60.73
Zm00001d011514_P001	Maize	mitochondrion	68.48	56.5
CDY68710	Canola	mitochondrion, peroxisome	38.79	56.14
PGSC0003DMT400078947	Potato	mitochondrion	72.73	54.55
KXG22553	Sorghum	plastid	69.7	51.57
Zm00001d030959_P001	Maize	extracellular, mitochondrion	33.94	48.28
PGSC0003DMT400035008	Potato	mitochondrion	32.12	33.76
HORVU3Hr1G059830.7	Barley	mitochondrion	32.12	20.95

Protein Annotations

EntrezGene:100526856	Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	EMBL:ACUP02010342	EMBL:BT091656	UniProt:C6T2J7
EnsemblPlantsGene:GLYMA_17G088900	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006879
GO:GO:0008150	GO:GO:0008152	GO:GO:0008198	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0016740	GO:GO:0019538	GO:GO:0019725	GO:GO:0036455	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051539	GO:GO:0097428	InterPro:ISC_FeS_clus_asmbl_IscU	EnsemblPlants:KRH03283
ProteinID:KRH03283	ProteinID:KRH03283.1	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8
SUPFAM:SSF82649	TIGRFAMs:TIGR01999	UniParc:UPI00019AF732	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:6902469..6904437

Molecular Weight (calculated)

17768.4 Da

IEP (calculated)

9.192

GRAVY (calculated)

-0.252

Length

165 amino acids

Sequence
(BLAST)

001: MLRVGAKRVL ETTLFGVRVP ARLYHERVVD HYDNPRNVGS FDKNDPSVGT GLVGAPACGD VMKLQIKVDD KTGKIVDARF KTFGCGSAIA SSSVATEWVK
101: GRQMEEVLTI KNTEIAKHLS LPPVKLHCSM LAEDAIKAAV KDYEAKRAKA TASGEAATEE KPATA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.