Factsheet for PGSC0003DMT400046740

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400018924
PGSC0003DMT400020128
PGSC0003DMT400044692
PGSC0003DMT400054981

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	PGSC0003DMT400020128	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400044692	AT2G42790.1	21798944
AT4G22220.1	PGSC0003DMT400018924	AT4G25680.1	21798944
AT4G22220.1	PGSC0003DMT400054981	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112900.2.1	Tomato	mitochondrion	97.59	97.59
GSMUA_Achr10P...	Banana	cytosol	53.01	83.81
GSMUA_Achr6P22070_001	Banana	cytosol	50.6	83.17
GSMUA_Achr6P09070_001	Banana	mitochondrion	81.93	80.0
KRH03283	Soybean	mitochondrion	77.71	78.18
KRH57077	Soybean	mitochondrion	77.11	77.58
VIT_01s0127g00450.t01	Wine grape	mitochondrion	59.04	76.56
Bra013601.1-P	Field mustard	mitochondrion	71.69	74.84
CDX82924	Canola	mitochondrion	71.08	74.68
KRH54391	Soybean	mitochondrion	77.11	74.42
KRH19966	Soybean	mitochondrion	77.11	74.42
Os01t0662600-02	Rice	mitochondrion	75.9	73.68
TraesCS3A01G240500.1	Wheat	mitochondrion	77.11	73.14
TraesCS3D01G240900.1	Wheat	mitochondrion	77.11	73.14
CDX79137	Canola	mitochondrion	69.88	72.96
TraesCS3B01G268800.1	Wheat	mitochondrion	77.71	72.88
CDX76383	Canola	mitochondrion	71.69	72.56
Bra020855.1-P	Field mustard	mitochondrion	71.69	72.56
CDX94542	Canola	cytosol	46.99	72.22
CDY27446	Canola	mitochondrion	71.08	71.95
TraesCS1D01G414700.1	Wheat	mitochondrion	72.29	71.43
TraesCS1B01G436500.1	Wheat	mitochondrion	71.69	71.26
AT4G22220.1	Thale cress	mitochondrion	71.69	71.26
Zm00001d043971_P001	Maize	mitochondrion	77.11	71.11
Os05t0568100-01	Rice	mitochondrion	72.89	70.35
EES03388	Sorghum	mitochondrion	75.9	69.61
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	48.19	69.57
TraesCS1A01G406300.1	Wheat	mitochondrion	71.08	68.6
Zm00001d029638_P001	Maize	cytosol	30.72	64.56
AT3G01020.1	Thale cress	mitochondrion	62.65	63.8
AT4G04080.1	Thale cress	mitochondrion	65.66	63.74
Zm00001d043816_P001	Maize	cytosol, plastid	30.12	63.29
PGSC0003DMT400078947	Potato	mitochondrion	82.53	62.27
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	71.08	61.78
Zm00001d011514_P001	Maize	mitochondrion	69.88	58.0
KXG22553	Sorghum	plastid	71.69	53.36
CDY68710	Canola	mitochondrion, peroxisome	35.54	51.75
Zm00001d030959_P001	Maize	extracellular, mitochondrion	33.73	48.28
PGSC0003DMT400035008	Potato	mitochondrion	32.53	34.39
HORVU3Hr1G059830.7	Barley	mitochondrion	31.33	20.55

Protein Annotations

EntrezGene:102588437	Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	InterPro:ISC_FeS_clus_asmbl_IscU	UniProt:M1BJJ2
InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	EnsemblPlantsGene:PGSC0003DMG400018149	PGSC:PGSC0003DMG400018149	EnsemblPlants:PGSC0003DMT400046740	PANTHER:PTHR10093
PANTHER:PTHR10093:SF8	SUPFAM:SSF82649	TIGRFAMs:TIGR01999	UniParc:UPI000296F3C6	RefSeq:XP_006344401.1	:

Description

Iron-sulfer cluster scaffold protein ISU1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018149]

Coordinates

chr3:+:52690743..52694203

Molecular Weight (calculated)

17892.5 Da

IEP (calculated)

9.245

GRAVY (calculated)

-0.331

Length

166 amino acids

Sequence
(BLAST)

001: MLKHVGNRIL GLGQRSPVTR GVLPRLYHER VVDHYNNPRN VGSFDKNDPT VGTGLVGAPA CGDVMKLQIK VDEQTGKITD ACFKTFGCGS AIASSSVATE
101: WVKGRQMEEV LSIKNTEIAK HLSLPPVKLH CSMLAEDAIK AAVKDYEAKK AKFNGNAENA SSEKAA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.