Factsheet for PGSC0003DMT400054981

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006860.2.1	Tomato	mitochondrion, plastid	88.81	89.14
AT5G06410.1	Thale cress	plastid	49.25	52.38
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	51.49	51.69
CDY55759	Canola	mitochondrion, plastid	50.37	50.75
CDX98921	Canola	nucleus, plastid	50.75	50.75
Bra005895.1-P	Field mustard	mitochondrion, plastid	50.0	50.57
KRH32887	Soybean	mitochondrion	50.0	50.57
CDY57992	Canola	mitochondrion, nucleus, plastid	49.63	50.38
KRH72132	Soybean	mitochondrion	49.63	50.0
Bra009192.1-P	Field mustard	mitochondrion, nucleus, plastid	49.25	49.81
Os12t0456200-01	Rice	mitochondrion	47.39	48.85
Zm00001d044417_P001	Maize	mitochondrion	46.27	47.88
EES03242	Sorghum	mitochondrion	46.64	47.35
HORVU7Hr1G043340.3	Barley	mitochondrion	45.52	47.1
TraesCS7A01G213900.1	Wheat	mitochondrion	45.15	46.36
TraesCS7B01G121200.1	Wheat	mitochondrion	45.15	46.36
TraesCS7D01G216000.3	Wheat	mitochondrion	44.4	43.91
GSMUA_Achr9P25930_001	Banana	cytosol	50.75	40.48

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	EntrezGene:102596654	MapMan:7.11.2.2.6	ncoils:Coil	InterPro:DnaJ_domain
GO:GO:0001671	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0032781	GO:GO:0051087
GO:GO:0051259	GO:GO:0097428	InterPro:HscB	InterPro:HscB_C_sf	InterPro:HscB_oligo_C	InterPro:IPR001623
InterPro:IPR036386	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M1BX55	PFAM:PF00226	PFAM:PF07743
EnsemblPlantsGene:PGSC0003DMG400021337	PGSC:PGSC0003DMG400021337	EnsemblPlants:PGSC0003DMT400054981	PFscan:PS50076	PANTHER:PTHR14021	SMART:SM00271
SUPFAM:SSF46565	SUPFAM:SSF47144	TIGRFAMs:TIGR00714	UniParc:UPI000295F01F	RefSeq:XP_006348436.1	:

Description

Co-chaperone protein HscB, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400021337]

Coordinates

chr1:-:2688615..2693871

Molecular Weight (calculated)

31052.9 Da

IEP (calculated)

6.766

GRAVY (calculated)

-0.560

Length

268 amino acids

Sequence
(BLAST)

001: MLMKKLRIST PFSQRLLLGR REIVISSSKT QFDFPSISPK VEQFPQFIQS RKLNFLRNDL GFSGRTLFSS EAAQKNSCWN CCNGVSSNTT PFLVCTACGC
101: VQPVDQSVDY FQIFGLEKKY EIEGENLERK YKDWQRKLHP DLVHTKSQKE REYAAEQSAR VIDAYRTLTD PLSRAIYILK LEGVHVDEEE KIDDVELLTE
201: MLEIRETVDE ADDSQSLKQI QGQIQGKFEQ SSISFADAFQ SRKYEEALAA IRRMTYYKRA NEEIVRKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.