Factsheet for Zm00001d044417_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03242	Sorghum	mitochondrion	93.44	91.67
Os12t0456200-01	Rice	mitochondrion	75.68	75.38
TraesCS7A01G213900.1	Wheat	mitochondrion	72.59	72.03
TraesCS7B01G121200.1	Wheat	mitochondrion	72.2	71.65
HORVU7Hr1G043340.3	Barley	mitochondrion	70.27	70.27
TraesCS7D01G216000.3	Wheat	mitochondrion	70.66	67.53
AT5G06410.1	Thale cress	plastid	50.19	51.59
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	51.35	49.81
CDY57992	Canola	mitochondrion, nucleus, plastid	47.88	46.97
KRH32887	Soybean	mitochondrion	47.88	46.79
CDX98921	Canola	nucleus, plastid	48.26	46.64
Bra009192.1-P	Field mustard	mitochondrion, nucleus, plastid	47.49	46.42
PGSC0003DMT400054981	Potato	mitochondrion	47.88	46.27
KRH72132	Soybean	mitochondrion	47.49	46.24
Solyc01g006860.2.1	Tomato	mitochondrion, plastid	47.1	45.69
CDY55759	Canola	mitochondrion, plastid	46.72	45.49
Bra005895.1-P	Field mustard	mitochondrion, plastid	45.95	44.91
GSMUA_Achr9P25930_001	Banana	cytosol	53.28	41.07

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	EntrezGene:103651583	MapMan:7.11.2.2.6	UniProt:A0A1D6NLJ6	InterPro:DnaJ_domain
GO:GO:0001671	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0032781	GO:GO:0051087
GO:GO:0051259	GO:GO:0055072	GO:GO:0097428	InterPro:HscB	InterPro:HscB_C_sf	InterPro:HscB_oligo_C
InterPro:IPR001623	InterPro:IPR036386	InterPro:IPR036869	InterPro:J_dom_sf	ProteinID:ONM41091.1	PFAM:PF07743
PFscan:PS50076	PANTHER:PTHR14021	PANTHER:PTHR14021:SF15	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF47144
SignalP:SignalP-noTM	TIGRFAMs:TIGR00714	UniParc:UPI0002217CA8	EnsemblPlantsGene:Zm00001d044417	EnsemblPlants:Zm00001d044417_P001	EnsemblPlants:Zm00001d044417_T001
SEG:seg	:	:	:	:	:

Description

DNAJ heat shock N-terminal domain-containing protein

Coordinates

chr3:-:227495710..227499719

Molecular Weight (calculated)

28689.9 Da

IEP (calculated)

6.783

GRAVY (calculated)

-0.445

Length

259 amino acids

Sequence
(BLAST)

001: MWRRAGAGPL LHHLAAAASA AAAGRCINGR PLPPMPTASW SPLFQHNLGI SWGSASVGAP FRSLSNQSSG GGACWSCGAT GAFLSCGSCG SVQPVDPAVD
101: YFQIFGLKRE YNITDNNLEG KYKDWQKKLH PDLVHSKSEK ERGYAAEQSA LVIDAYRTLS KPLSRALYLL KLEGIHVDEE KTINDPELLM EMMEIREAVS
201: DASDSQTLEK IQSQIKAKLE TWSDSFQEAF DRKDFDRAVE ATQRMRYYER AVEETVKKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.