Factsheet for GSMUA_Achr9P25930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0456200-01	Rice	mitochondrion	42.86	55.38
HORVU7Hr1G043340.3	Barley	mitochondrion	41.96	54.44
EES03242	Sorghum	mitochondrion	42.56	54.17
Zm00001d044417_P001	Maize	mitochondrion	41.07	53.28
TraesCS7B01G121200.1	Wheat	mitochondrion	40.77	52.49
TraesCS7A01G213900.1	Wheat	mitochondrion	40.48	52.11
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	41.37	52.06
PGSC0003DMT400054981	Potato	mitochondrion	40.48	50.75
AT5G06410.1	Thale cress	plastid	37.8	50.4
Solyc01g006860.2.1	Tomato	mitochondrion, plastid	39.88	50.19
TraesCS7D01G216000.3	Wheat	mitochondrion	40.48	50.18
KRH72132	Soybean	mitochondrion	38.69	48.87
KRH32887	Soybean	mitochondrion	37.8	47.92
CDX98921	Canola	nucleus, plastid	36.9	46.27
CDY57992	Canola	mitochondrion, nucleus, plastid	36.31	46.21
CDY55759	Canola	mitochondrion, plastid	36.31	45.86
Bra009192.1-P	Field mustard	mitochondrion, nucleus, plastid	36.01	45.66
Bra005895.1-P	Field mustard	mitochondrion, plastid	35.42	44.91

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	MapMan:7.11.2.2.6	InterPro:DnaJ_domain	GO:GO:0001671	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0030234	GO:GO:0032781	GO:GO:0051087	GO:GO:0051259	GO:GO:0055072
GO:GO:0097428	EnsemblPlantsGene:GSMUA_Achr9G25930_001	EnsemblPlants:GSMUA_Achr9P25930_001	EnsemblPlants:GSMUA_Achr9T25930_001	InterPro:HscB	InterPro:HscB_C_sf
InterPro:HscB_oligo_C	InterPro:IPR001623	InterPro:IPR036386	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:M0U3K0
PFAM:PF07743	PFscan:PS50076	PANTHER:PTHR14021	PANTHER:PTHR14021:SF15	SMART:SM00271	SUPFAM:SSF46565
SUPFAM:SSF47144	TIGRFAMs:TIGR00714	UniParc:UPI0002956821	:	:	:

Description

Putative Iron-sulfur cluster co-chaperone protein HscB, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G25930_001]

Coordinates

chr9:-:30412045..30419006

Molecular Weight (calculated)

38743.5 Da

IEP (calculated)

7.522

GRAVY (calculated)

-0.394

Length

336 amino acids

Sequence
(BLAST)

001: MESLLQREHL PMSQSRYKLL NILSVFSVLR RQFLENNCLN VFLIMRRSKN CSLFSLLRTS LKELVYENTA KRGLWLSASS LVHEDLHLHP RILSNFCINT
101: RSFSIPVKRF DRASNCRGLD HHDFPEVRVS NRFLCSSEAG SGELPRCWNC GGAAVSPGPF LACGLCGSVQ PVDQSIDFFQ IFGLERKYEI KDGNLEGKYK
201: DWQKKLHPDL VHSKSEKEKM FAAEQSARVI DAYRTLSKPL LRAIYLLKLE GVHVDEEKTI TDPDLLAEMM DIREAVEEAN DSHSLNQIQT QVEEKFEKCS
301: RSFEQAFKIH DFDNAIAAIE RMRYHDRALE EITKKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.