CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044417_P001	Maize	mitochondrion	91.67	93.44
Os12t0456200-01	Rice	mitochondrion	76.52	77.69
TraesCS7A01G213900.1	Wheat	mitochondrion	73.48	74.33
TraesCS7B01G121200.1	Wheat	mitochondrion	73.11	73.95
HORVU7Hr1G043340.3	Barley	mitochondrion	72.35	73.75
TraesCS7D01G216000.3	Wheat	mitochondrion	72.35	70.48
AT5G06410.1	Thale cress	plastid	49.62	51.98
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	51.52	50.94
KRH32887	Soybean	mitochondrion	47.35	47.17
CDX98921	Canola	nucleus, plastid	47.35	46.64
PGSC0003DMT400054981	Potato	mitochondrion	47.35	46.64
KRH72132	Soybean	mitochondrion	46.97	46.62
CDY57992	Canola	mitochondrion, nucleus, plastid	46.59	46.59
Solyc01g006860.2.1	Tomato	mitochondrion, plastid	46.59	46.07
Bra009192.1-P	Field mustard	mitochondrion, nucleus, plastid	46.21	46.04
CDY55759	Canola	mitochondrion, plastid	45.08	44.74
Bra005895.1-P	Field mustard	mitochondrion, plastid	44.7	44.53
GSMUA_Achr9P25930_001	Banana	cytosol	54.17	42.56

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	MapMan:7.11.2.2.6	EntrezGene:8082512	UniProt:C5XQB2	InterPro:DnaJ_domain
EnsemblPlants:EES03242	ProteinID:EES03242	ProteinID:EES03242.1	GO:GO:0001671	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0030234	GO:GO:0032781	GO:GO:0051087	GO:GO:0051259	GO:GO:0055072	GO:GO:0097428
InterPro:HscB	InterPro:HscB_C_sf	InterPro:HscB_oligo_C	InterPro:IPR001623	InterPro:IPR036386	InterPro:IPR036869
InterPro:J_dom_sf	PFAM:PF07743	PFscan:PS50076	PANTHER:PTHR14021	PANTHER:PTHR14021:SF15	SMART:SM00271
EnsemblPlantsGene:SORBI_3003G212500	SUPFAM:SSF46565	SUPFAM:SSF47144	TIGRFAMs:TIGR00714	UniParc:UPI0001A84F2F	RefSeq:XP_002458122.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:54711917..54715142

Molecular Weight (calculated)

29152.5 Da

IEP (calculated)

8.206

GRAVY (calculated)

-0.506

Length

264 amino acids

Sequence
(BLAST)

001: MWRRAGAGPL RHHLAAAAAA AAGRRVNRRP LPPITTAASS PASCSTLSQH NLGILWGSSS VGAPFRSLSN QSSGGGGACW SCGATGAFLS CGSCGSVQPV
101: DPAVDYFQIF GLKREYNIKD NNLEGKYKDW QKKLHPDLVH SKSEKERGYA AEQSALVIDA YRTLSKPLPR ALYLLKLEGI HVDEEKTIND PELLMEMMEI
201: REAVSDASDS QTLEKIQSQI KEKLETWSGS FQEAFDKKDF DRAVEATQRM RYYERAVEET VKKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.