CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57992	Canola	mitochondrion, nucleus, plastid	88.43	89.77
CDY55759	Canola	mitochondrion, plastid	75.75	76.32
AT5G06410.1	Thale cress	plastid	68.66	73.02
PGSC0003DMT400054981	Potato	mitochondrion	50.75	50.75
HORVU7Hr1G043340.3	Barley	mitochondrion	48.51	50.19
Solyc01g006860.2.1	Tomato	mitochondrion, plastid	49.63	49.81
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	49.63	49.81
Os12t0456200-01	Rice	mitochondrion	47.39	48.85
TraesCS7B01G121200.1	Wheat	mitochondrion	47.39	48.66
TraesCS7A01G213900.1	Wheat	mitochondrion	47.01	48.28
Zm00001d044417_P001	Maize	mitochondrion	46.64	48.26
EES03242	Sorghum	mitochondrion	46.64	47.35
KRH32887	Soybean	mitochondrion	46.64	47.17
TraesCS7D01G216000.3	Wheat	mitochondrion	47.39	46.86
KRH72132	Soybean	mitochondrion	46.27	46.62
GSMUA_Achr9P25930_001	Banana	cytosol	46.27	36.9

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	MapMan:7.11.2.2.6	GO:A0A078ECK7	EnsemblPlants:CDX98921	ProteinID:CDX98921
ProteinID:CDX98921.1	InterPro:DnaJ_domain	GO:GO:0001671	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234
GO:GO:0051087	GO:GO:0051259	GO:GO:0097428	EnsemblPlantsGene:GSBRNA2T00107030001	InterPro:HscB	InterPro:HscB_C_sf
InterPro:HscB_oligo_C	InterPro:IPR001623	InterPro:IPR036386	InterPro:IPR036869	InterPro:J_dom_sf	PFAM:PF07743
PFscan:PS50076	PANTHER:PTHR14021	PANTHER:PTHR14021:SF15	SUPFAM:SSF46565	SUPFAM:SSF47144	TIGRFAMs:TIGR00714
UniParc:UPI0004EE40D4	SEG:seg	:	:	:	:

Description

BnaC09g49140D

Coordinates

chrLK031907:-:616891..618342

Molecular Weight (calculated)

30892.2 Da

IEP (calculated)

8.049

GRAVY (calculated)

-0.759

Length

268 amino acids

Sequence
(BLAST)

001: MNRARKLVAS ISTLSTRRRT YSPSSSSTFR TISIINSQTH HHSSRRESFQ PSSSAKPLCL RFSGREFSSG SSDTTSSSVC WNCGSSSEKA AFLFCDSCRS
101: IQPIDDSVDY FQIFDLEKKY ELDAGSLEGK YKDWQKKLHP DLVHNKSQKE RDYAADQSAK VTEAYRTLTK RLSRAMYIMK LNGKNVNEEE TITDPTLLME
201: IMELRETISE ANDSKELDQI RSQVQEKLKQ WSDSFVEAFE SHRFDEAVKC IQRMTYYERA CEEIVKKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.