Factsheet for Solyc01g006860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 1
mitochondrion 7
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054981	Potato	mitochondrion	89.14	88.81
VIT_08s0032g00960.t01	Wine grape	mitochondrion, plastid	51.31	51.31
KRH32887	Soybean	mitochondrion	50.56	50.94
AT5G06410.1	Thale cress	plastid	47.57	50.4
CDY57992	Canola	mitochondrion, nucleus, plastid	49.44	50.0
KRH72132	Soybean	mitochondrion	49.81	50.0
CDX98921	Canola	nucleus, plastid	49.81	49.63
CDY55759	Canola	mitochondrion, plastid	49.44	49.62
Bra005895.1-P	Field mustard	mitochondrion, plastid	49.06	49.43
Bra009192.1-P	Field mustard	mitochondrion, nucleus, plastid	49.06	49.43
Os12t0456200-01	Rice	mitochondrion	47.57	48.85
HORVU7Hr1G043340.3	Barley	mitochondrion	46.07	47.49
Zm00001d044417_P001	Maize	mitochondrion	45.69	47.1
EES03242	Sorghum	mitochondrion	46.07	46.59
TraesCS7A01G213900.1	Wheat	mitochondrion	44.94	45.98
TraesCS7B01G121200.1	Wheat	mitochondrion	44.94	45.98
TraesCS7D01G216000.3	Wheat	mitochondrion	44.19	43.54
GSMUA_Achr9P25930_001	Banana	cytosol	50.19	39.88

Protein Annotations

Gene3D:1.10.287.110	Gene3D:1.20.1280.20	MapMan:7.11.2.2.6	ncoils:Coil	InterPro:DnaJ_domain	GO:GO:0001671
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0032781	GO:GO:0051087	GO:GO:0051259
GO:GO:0097428	InterPro:HscB	InterPro:HscB_C_sf	InterPro:HscB_oligo_C	InterPro:IPR001623	InterPro:IPR036386
InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4ASQ2	PFAM:PF00226	PFAM:PF07743	PFscan:PS50076
PANTHER:PTHR14021	PANTHER:PTHR14021:SF15	SMART:SM00271	SUPFAM:SSF46565	SUPFAM:SSF47144	EnsemblPlantsGene:Solyc01g006860.2
EnsemblPlants:Solyc01g006860.2.1	TIGRFAMs:TIGR00714	UniParc:UPI00027624D7	:	:	:

Description

No Description!

Coordinates

chr1:-:1422780..1427208

Molecular Weight (calculated)

31018.0 Da

IEP (calculated)

7.304

GRAVY (calculated)

-0.565

Length

267 amino acids

Sequence
(BLAST)

001: MLMKKLRIST PFLQRLLLGR KEIVISSKTQ FDFPSISPKV EKFPQFIQSR KLNFLRNDLG FSGRTLFSSE AAQKFSCWNC CNGVSSNTTP FLVCNACGCV
101: QPVDQSVDYF QIFGLEKKYE IEGENLERKY KDWQRKLHPD LVHTKSQKER EYAAEQSARV IDAYRTLTDP LSRAIYILKL EGVHVDEEEK IDDVELLTEM
201: LEIRETVDEA NDSQELKQIQ GQIQGKFEQS SNSFADALQS RKYEEALAAI RRMTYYKRAN EEIVRKL

Best Arabidopsis Sequence Match ( AT5G06410.1 )
(BLAST)

001: MKKTKTMVAS ISTLIRRTYP STNQCNSLAT IQSQTQLPRE SLQHHSSAEG RLRFSGRVFC SESGAGCWNC GEKAAFLFCN SCRSIQPVDD SVDYFQIFGL
101: EKKYEIDPGS LEGKYKDWQK KLHPDLVHNK SKKERDYAAE QSAKVTEACR TLTKRLSRAM YIMKLNGVNV NEEETITDPT LLMEIMELRE AISEADDSTS
201: LNQIRSQVQE KLKQWSDSFV EAFESQKFDD AVKCIQRMTY YERACEEILK KL

Arabidopsis Description

DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L7K4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.