CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES03242
EES04804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	EES04804	AT2G42790.1	21798944
AT4G22220.1	EER87703	AT4G25680.1	21798944
AT4G22220.1	EES03242	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G406300.1	Wheat	mitochondrion	60.99	79.07
TraesCS1B01G436500.1	Wheat	mitochondrion	59.19	79.04
TraesCS1D01G414700.1	Wheat	mitochondrion	59.19	78.57
Os05t0568100-01	Rice	mitochondrion	59.19	76.74
Bra013601.1-P	Field mustard	mitochondrion	51.12	71.7
Solyc03g112900.2.1	Tomato	mitochondrion	53.36	71.69
PGSC0003DMT400046740	Potato	mitochondrion	53.36	71.69
KRH57077	Soybean	mitochondrion	52.47	70.91
Zm00001d029638_P001	Maize	cytosol	25.11	70.89
VIT_01s0127g00460.t01	Wine grape	cytosol, endoplasmic reticulum	16.14	70.59
KRH03283	Soybean	mitochondrion	51.57	69.7
HORVU1Hr1G089730.1	Barley	cytosol, nucleus	59.64	69.63
Zm00001d043816_P001	Maize	cytosol, plastid	24.66	69.62
Bra020855.1-P	Field mustard	mitochondrion	51.12	69.51
EES03388	Sorghum	mitochondrion	56.05	69.06
Solyc07g007450.2.1	Tomato	mitochondrion	50.67	68.9
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	35.43	68.7
KRH54391	Soybean	mitochondrion	52.91	68.6
AT4G22220.1	Thale cress	mitochondrion	51.12	68.26
KRH19966	Soybean	mitochondrion	52.47	68.02
AT3G01020.1	Thale cress	mitochondrion	46.64	63.8
AT4G04080.1	Thale cress	mitochondrion	45.74	59.65
PGSC0003DMT400078947	Potato	mitochondrion	50.22	50.91
PGSC0003DMT400035008	Potato	mitochondrion	22.42	31.85
CDX94083	Canola	nucleus	27.8	21.16

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	UniProt:A0A1B6PA76	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	InterPro:ISC_FeS_clus_asmbl_IscU	EnsemblPlants:KXG22553
ProteinID:KXG22553	ProteinID:KXG22553.1	InterPro:NIF_FeS_clus_asmbl_NifU_N	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8
EnsemblPlantsGene:SORBI_3009G236400	SUPFAM:SSF82649	TIGRFAMs:TIGR01999	UniParc:UPI00081ACF4F	SEG:seg	:

Description

hypothetical protein

Coordinates

chr9:+:57513307..57515626

Molecular Weight (calculated)

23776.7 Da

IEP (calculated)

9.208

GRAVY (calculated)

-0.209

Length

223 amino acids

Sequence
(BLAST)

001: MTCLLSPFLF VPIARLDTIT RRKPKPNGTR GESRDASYDS ELRALPAAMM LRAAGRRLLG LGGGEAAPPV PPVATVAAVA IRGRGYHERV VDHYNNPRNV
101: GSFDKDDADV GTGIVGAPAC GDVMKLQIRV DEGSGRIVDA RFKTFGCGSA IASSSVASEW IKGKQMEEVV AIKNTEIAKH LSLPPVKLHC SMLAEDAIKA
201: AVKDYEAKKG KLAKAEEQDI PSP

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.