CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES03242
EES04804

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	EES04804	AT2G42790.1	21798944
AT4G22220.1	EER87703	AT4G25680.1	21798944
AT4G22220.1	EES03242	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043971_P001	Maize	mitochondrion	91.71	92.22
GSMUA_Achr6P22070_001	Banana	cytosol	46.96	84.16
Os01t0662600-02	Rice	mitochondrion	79.01	83.63
TraesCS3D01G240900.1	Wheat	mitochondrion	78.45	81.14
TraesCS3B01G268800.1	Wheat	mitochondrion	79.01	80.79
TraesCS3A01G240500.1	Wheat	mitochondrion	77.9	80.57
Zm00001d011514_P001	Maize	mitochondrion	83.98	76.0
Solyc03g112900.2.1	Tomato	mitochondrion	69.61	75.9
PGSC0003DMT400046740	Potato	mitochondrion	69.61	75.9
KRH03283	Soybean	mitochondrion	67.96	74.55
KRH57077	Soybean	mitochondrion	67.96	74.55
Bra013601.1-P	Field mustard	mitochondrion	64.09	72.96
Bra020855.1-P	Field mustard	mitochondrion	64.64	71.34
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	44.75	70.43
Solyc07g007450.2.1	Tomato	mitochondrion	63.54	70.12
AT4G22220.1	Thale cress	mitochondrion	64.64	70.06
KRH54391	Soybean	mitochondrion	66.3	69.77
KRH19966	Soybean	mitochondrion	66.3	69.77
Zm00001d030959_P001	Maize	extracellular, mitochondrion	42.54	66.38
AT3G01020.1	Thale cress	mitochondrion	58.56	65.03
AT4G04080.1	Thale cress	mitochondrion	58.01	61.4
KXG22553	Sorghum	plastid	69.06	56.05
PGSC0003DMT400078947	Potato	mitochondrion	64.64	53.18
PGSC0003DMT400035008	Potato	mitochondrion	27.07	31.21

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	EntrezGene:8061816	UniProt:C5XFX2	EnsemblPlants:EES03388	ProteinID:EES03388
ProteinID:EES03388.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006879
GO:GO:0008150	GO:GO:0008152	GO:GO:0008198	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0016740	GO:GO:0019538	GO:GO:0019725	GO:GO:0036455	GO:GO:0046872
GO:GO:0051536	GO:GO:0051537	GO:GO:0051539	GO:GO:0097428	InterPro:ISC_FeS_clus_asmbl_IscU	InterPro:NIF_FeS_clus_asmbl_NifU_N
PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	EnsemblPlantsGene:SORBI_3003G246700	SUPFAM:SSF82649	unigene:Sbi.1295
TIGRFAMs:TIGR01999	UniParc:UPI00019AAA1C	RefSeq:XP_002458268.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:58536666..58542983

Molecular Weight (calculated)

18861.7 Da

IEP (calculated)

8.327

GRAVY (calculated)

-0.161

Length

181 amino acids

Sequence
(BLAST)

001: MLRAGGRLLL APGLRRFGLG TGAAAGEAGP AAAAAGVRAY HERVVDHYNN PRNVGSFDKE DPNVGTGLVG APACGDVMKL QIRVDEDSGK IVDACFKTFG
101: CGSAIASSSV ATEWVKGKPM DEVLTIKNTE IAKHLSLPPV KLHCSMLAED AIKAAVKDYE AKKVKMGQKG VDSPSEKAAE A

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.