Factsheet for Zm00001d043971_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016248_P001
Zm00001d044417_P001
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22220.1	Zm00001d016248_P001	AT2G42790.1	21798944
AT4G22220.1	Zm00001d045580_P001	AT4G25680.1	21798944
AT4G22220.1	Zm00001d044417_P001	AT5G06410.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03388	Sorghum	mitochondrion	92.22	91.71
Os01t0662600-02	Rice	mitochondrion	81.11	85.38
GSMUA_Achr6P22070_001	Banana	cytosol	47.22	84.16
TraesCS3D01G240900.1	Wheat	mitochondrion	80.56	82.86
TraesCS3B01G268800.1	Wheat	mitochondrion	81.11	82.49
TraesCS3A01G240500.1	Wheat	mitochondrion	80.0	82.29
Solyc03g112900.2.1	Tomato	mitochondrion	71.11	77.11
PGSC0003DMT400046740	Potato	mitochondrion	71.11	77.11
Zm00001d011514_P001	Maize	mitochondrion	85.56	77.0
KRH57077	Soybean	mitochondrion	69.44	75.76
KRH03283	Soybean	mitochondrion	69.44	75.76
Bra013601.1-P	Field mustard	mitochondrion	63.33	71.7
Bra020855.1-P	Field mustard	mitochondrion	65.0	71.34
Bra029483.1-P	Field mustard	cytosol, mitochondrion, plastid	45.56	71.3
Solyc07g007450.2.1	Tomato	mitochondrion	64.44	70.73
KRH54391	Soybean	mitochondrion	66.67	69.77
KRH19966	Soybean	mitochondrion	66.67	69.77
AT4G22220.1	Thale cress	mitochondrion	63.89	68.86
Zm00001d030959_P001	Maize	extracellular, mitochondrion	43.33	67.24
AT3G01020.1	Thale cress	mitochondrion	59.44	65.64
Zm00001d029638_P001	Maize	cytosol	27.22	62.03
AT4G04080.1	Thale cress	mitochondrion	58.89	61.99
Zm00001d043816_P001	Maize	cytosol, plastid	26.67	60.76
PGSC0003DMT400078947	Potato	mitochondrion	65.56	53.64
PGSC0003DMT400035008	Potato	mitochondrion	27.78	31.85

Protein Annotations

Gene3D:3.90.1010.10	MapMan:7.11.2.1.2	UniProt:B4FN02	EMBL:BT038490	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005759	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016226	GO:GO:0046872	GO:GO:0051536	GO:GO:0051537	InterPro:ISC_FeS_clus_asmbl_IscU	InterPro:NIF_FeS_clus_asmbl_NifU_N
ProteinID:ONM39542.1	PFAM:PF01592	PANTHER:PTHR10093	PANTHER:PTHR10093:SF8	SUPFAM:SSF82649	TIGRFAMs:TIGR01999
UniParc:UPI00017B6DDD	EnsemblPlantsGene:Zm00001d043971	EnsemblPlants:Zm00001d043971_P001	EnsemblPlants:Zm00001d043971_T001	SEG:seg	:

Description

Iron-sulfur cluster assembly protein 1

Coordinates

chr3:+:215389431..215393301

Molecular Weight (calculated)

18818.5 Da

IEP (calculated)

8.633

GRAVY (calculated)

-0.298

Length

180 amino acids

Sequence
(BLAST)

001: MLRAGGRRLL APGLRRLGLG TGASGEAGPA AAAAGVRAYH ERVVDHYNNP RNVGSFDKDD PNVGTGLVGA PACGDVMKLQ IRVDENSGKI VDACFKTFGC
101: GSAIASSSVA TEWVKGKPMD EVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYEA KKSKMGQKGE DSPSEKAAEA

Best Arabidopsis Sequence Match ( AT4G22220.1 )
(BLAST)

001: MMLKQAAKKA LGLTSRQSTP WSVGILRTYH ENVIDHYDNP RNVGSFDKND PNVGTGLVGA PACGDVMKLQ IKVDEKTGQI VDARFKTFGC GSAIASSSVA
101: TEWVKGKAME DVLTIKNTEI AKHLSLPPVK LHCSMLAEDA IKAAVKDYKE KRVKTNGAAA AGETTQA

Arabidopsis Description

ISU1Iron-sulfur cluster assembly protein [Source:UniProtKB/TrEMBL;Acc:A0A178UZH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.