Skip to main content
crop-pal logo
Maize
Search for another protein from :
Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • mitochondrion 3
  • cytosol 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, nucleus
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
 mitochondrion: 27297264
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d006270_P001
Zm00001d006725_P001
Zm00001d011328_P001
Zm00001d011474_P001
Zm00001d013481_P001
Zm00001d016016_P001
Zm00001d016248_P001
Zm00001d020860_P001
Zm00001d021462_P001
Zm00001d021463_P001
Zm00001d023264_P004
Zm00001d023266_P001
Zm00001d023647_P001
Zm00001d030109_P002
Zm00001d036800_P001
Zm00001d039090_P001
Zm00001d039091_P002
Zm00001d043386_P001
Zm00001d043813_P001
Zm00001d044054_P002
Zm00001d052541_P001
Zm00001d053054_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G42790.1 Zm00001d006725_P001 AT1G12920.1 21798944
AT2G42790.1 Zm00001d013481_P001 AT1G12920.1 21798944
AT2G42790.1 Zm00001d006270_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d020860_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d021462_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d021463_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d023647_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d036800_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d053054_P001 AT1G76150.1 21798944
AT2G42790.1 Zm00001d030109_P002 AT2G35500.1 21798944
AT2G42790.1 Zm00001d016016_P001 AT3G16120.1 21798944
AT2G42790.1 Zm00001d043386_P001 AT3G16120.1 21798944
AT2G42790.1 Zm00001d023264_P004 AT3G56900.1 21798944
AT2G42790.1 Zm00001d023266_P001 AT3G56900.1 21798944
AT2G42790.1 Zm00001d016248_P001 AT3G58750.1 21798944
AT2G42790.1 Zm00001d011328_P001 AT5G55190.1 21798944
AT2G42790.1 Zm00001d011474_P001 AT5G55190.1 21798944
AT2G42790.1 Zm00001d039090_P001 AT5G55190.1 21798944
AT2G42790.1 Zm00001d039091_P002 AT5G55190.1 21798944
AT2G42790.1 Zm00001d044054_P002 AT5G55190.1 21798944
AT3G58740.1 Zm00001d016248_P001 AT2G42790.1 21798944
AT3G58750.1 Zm00001d043813_P001 AT1G25420.1 21798944
AT3G58750.1 Zm00001d052541_P001 AT1G25420.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES04804 Sorghum mitochondrion 95.43 95.05
TraesCS5B01G416700.1 Wheat golgi 92.64 92.64
TraesCS5D01G422000.1 Wheat unclear 92.45 92.45
TraesCS5A01G413300.1 Wheat mitochondrion 91.85 91.85
Os02t0232400-01 Rice nucleus, plastid 88.87 89.4
HORVU5Hr1G099820.5 Barley plastid 89.46 87.89
CDX79848 Canola cytosol 36.78 83.71
CDY15651 Canola nucleus 29.22 82.58
GSMUA_Achr10P... Banana mitochondrion 75.55 79.83
VIT_12s0142g00610.t01 Wine grape plastid 80.12 78.71
PGSC0003DMT400020128 Potato plastid 80.12 78.4
Bra007417.1-P Field mustard cytosol 78.93 78.3
CDX98329 Canola cytosol, peroxisome, plastid 78.93 78.3
CDY49252 Canola cytosol 78.73 78.11
AT3G58750.1 Thale cress endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole 79.72 78.02
Solyc12g011000.1.1 Tomato nucleus 79.52 77.82
AT2G42790.1 Thale cress cytosol 78.73 77.8
CDX67764 Canola cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.33 77.56
Solyc07g055840.2.1 Tomato nucleus, unclear 78.73 77.5
CDY50821 Canola cytosol 78.53 77.45
Bra003355.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole 78.13 77.36
CDX71925 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 78.53 77.3
CDX79851 Canola cytosol 77.73 76.67
Bra004720.1-P Field mustard cytosol 77.73 76.67
PGSC0003DMT400044692 Potato plastid 77.14 75.93
KRH14452 Soybean nucleus 75.15 73.97
Bra007416.1-P Field mustard cytosol 65.61 73.5
KRH73702 Soybean cytosol, plastid 74.35 73.05
CDY49249 Canola cytosol 68.19 72.98
KRH46090 Soybean endoplasmic reticulum, nucleus 73.96 72.51
KRG98876 Soybean nucleus, plastid 73.96 72.37
CDY00587 Canola cytosol 66.2 70.85
AT3G58740.1 Thale cress cytosol 67.59 70.83
Bra014554.1-P Field mustard cytosol 66.0 70.64
CDX71926 Canola cytosol 63.82 67.01
HORVU0Hr1G030280.2 Barley cytosol 22.47 62.78
CDX89002 Canola endoplasmic reticulum, golgi 33.2 59.01
CDY49250 Canola extracellular 8.15 50.62
VIT_06s0080g00770.t01 Wine grape cytosol 20.68 49.06
CDX71928 Canola cytosol 66.8 40.63
Zm00001d053684_P005 Maize mitochondrion 21.67 22.52
Zm00001d053685_P002 Maize mitochondrion 21.07 22.46
Zm00001d015856_P007 Maize mitochondrion 19.28 19.88
Protein Annotations
Gene3D:1.10.230.10Gene3D:1.10.580.10MapMan:5.7.3.6.1UniProt:A0A1D6H6F1ProteinID:AQK70373.1InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synth-like_sm_a-subInterPro:Citrate_synthaseInterPro:Citrate_synthase_ASInterPro:Citrate_synthase_bac-typInterPro:Citrate_synthase_sfGO:GO:0003674
GO:GO:0003824GO:GO:0006091GO:GO:0006099GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016740GO:GO:0046912InterPro:IPR016142InterPro:IPR016143PFAM:PF00285PIRSF:PIRSF001369
PRINTS:PR00143ScanProsite:PS00480PANTHER:PTHR11739PANTHER:PTHR11739:SF4SUPFAM:SSF48256UniParc:UPI0001CAD201
EnsemblPlantsGene:Zm00001d016248EnsemblPlants:Zm00001d016248_P001EnsemblPlants:Zm00001d016248_T001SEG:seg::
Description
Citrate synthase 3 peroxisomal
Coordinates
chr5:-:152956416..152961046
Molecular Weight (calculated)
55255.4 Da
IEP (calculated)
9.393
GRAVY (calculated)
-0.200
Length
503 amino acids
Sequence
(BLAST)
001: MDRADPARGR LAVLSSHLRG AGAEEAAGLE RSPVSAPAPG PRAGALAVVD GRTGKRHEVK VSEDGTVRAT DFKKITTGKD DKGLKIYDPG YLNTAPVRSS
101: ICYIDGDEGI LRYRGYPIEE LAESSSFVEV AYLLMYGNLP TQSQLAGWEF AISQHSAVPQ GLLDIIQSMP HDAHPMGVLA SAMSTLSVFH PDANPALQGQ
201: DLYKSKQVRD KQIVRVLGKA PTIAAAAYLR LAGRPPVLPL NTLSYSENFL YMLDSLGDRT YKPNPRLARA LDILFILHAE HEMNCSTAAV RHLASSGVDV
301: FTALSGGVGA LYGPLHGGAN EAVLKMLNEI GSMENIPDFI VGVKNRKRKM SGFGHRVYKN YDPRAKVIRK LADEVFSIVG RDPLIEVAIA LEKAALSDEY
401: FIKRKLYPNV DFYSGLIYRA MGFPTEFFPV LFAIPRMGGW LAHWKESLDD PDTKIIRPQQ VYTGFWLRHY TPVRERVLSS QSEELGQVAT SNATRRRRAG
501: SAL
Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)
001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL
Arabidopsis Description
CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.