Factsheet for Bra007416.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004720.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	Bra004720.1-P	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49249	Canola	cytosol	96.88	92.55
Bra014554.1-P	Field mustard	cytosol	80.85	77.23
Bra007417.1-P	Field mustard	cytosol	81.96	72.58
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	81.74	72.24
AT3G58740.1	Thale cress	cytosol	77.06	72.08
Bra004720.1-P	Field mustard	cytosol	80.4	70.78
Os02t0232400-01	Rice	nucleus, plastid	75.5	67.8
Solyc12g011000.1.1	Tomato	nucleus	77.51	67.7
VIT_12s0142g00610.t01	Wine grape	plastid	76.61	67.19
PGSC0003DMT400020128	Potato	plastid	76.84	67.12
TraesCS5B01G416700.1	Wheat	golgi	74.83	66.8
TraesCS5A01G413300.1	Wheat	mitochondrion	74.83	66.8
TraesCS5D01G422000.1	Wheat	unclear	74.61	66.6
EES04804	Sorghum	mitochondrion	74.61	66.34
Solyc07g055840.2.1	Tomato	nucleus, unclear	74.83	65.75
Zm00001d016248_P001	Maize	mitochondrion	73.5	65.61
PGSC0003DMT400044692	Potato	plastid	74.39	65.36
KRH14452	Soybean	nucleus	73.72	64.77
HORVU5Hr1G099820.5	Barley	plastid	73.5	64.45
KRH73702	Soybean	cytosol, plastid	72.61	63.67
KRH46090	Soybean	endoplasmic reticulum, nucleus	72.61	63.55
GSMUA_Achr10P...	Banana	mitochondrion	67.04	63.24
KRG98876	Soybean	nucleus, plastid	71.71	62.65
CDX71928	Canola	cytosol	95.77	52.0
VIT_06s0080g00770.t01	Wine grape	cytosol	21.6	45.75
HORVU0Hr1G030280.2	Barley	cytosol	17.37	43.33
Bra014513.1-P	Field mustard	mitochondrion	22.49	21.4
Bra000351.1-P	Field mustard	cytosol	20.94	21.17
Bra037657.1-P	Field mustard	mitochondrion	21.6	20.42

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	EnsemblPlantsGene:Bra007416	EnsemblPlants:Bra007416.1	EnsemblPlants:Bra007416.1-P
InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	UniProt:M4CT74
PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4
SUPFAM:SSF48256	UniParc:UPI0002542E4F	:	:	:	:

Description

AT3G58750 (E=2e-133) CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase

Coordinates

chrA09:-:29073738..29076784

Molecular Weight (calculated)

49686.9 Da

IEP (calculated)

8.850

GRAVY (calculated)

-0.178

Length

449 amino acids

Sequence
(BLAST)

001: MERVNARLAV LSAHLEMSDP MPAAIKPWCT SSAGAPHGSL MGNLTIVDER TGKKYQVPVS EDGTVKSIDL KKITTGKDDK GLKLYDPGYF NTAPVRSSIS
101: YIDGDEGILR YRGYPIEELA ENCTFLEVAY LLIYGNLPSQ RQLADLEFEV SQHSAVPQGL LDIIQSMPQD AHPSGAFGQY IYKSKQVRDK QIFRILGQAP
201: TIAANAFLRT SGKPPVLPSN NFSYAENVLY MLDSMGNKSY KPNPRLARVL DIIFILHAEH EMNCSTAAAR HLASSGVDVY AAISGAVGAL YGPLHGGATD
301: AVSKMLSEIG TVENIPDFIQ CVKNKKRRLS GFGHRVYKTY DPRAKVVRKL AYEVFSIVGK DPLIEVAAAL EKAALSDEYF VKRKLYPNVD FYSGLVYRAM
401: GIPPQFIAVP RMAGYLAHWL ESLDDPDTKI MRPQQVYTGV WLRHYAPVK

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.