Factsheet for VIT_06s0080g00770.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03610.t01
VIT_02s0012g01800.t01
VIT_04s0008g05020.t01
VIT_06s0080g00770.t01
VIT_08s0040g00290.t01
VIT_09s0002g04280.t01
VIT_11s0016g04780.t01
VIT_12s0142g00610.t01
VIT_18s0001g00490.t01
VIT_18s0001g12240.t01
VIT_18s0041g00730.t01
VIT_18s0072g01010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	VIT_18s0001g12240.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0041g00730.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0072g01010.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0001g00490.t01	AT1G76150.1	21798944
AT2G42790.1	VIT_02s0012g01800.t01	AT2G35500.1	21798944
AT2G42790.1	VIT_09s0002g04280.t01	AT3G16120.1	21798944
AT2G42790.1	VIT_08s0040g00290.t01	AT3G56900.1	21798944
AT2G42790.1	VIT_06s0080g00770.t01	AT3G58750.1	21798944
AT2G42790.1	VIT_12s0142g00610.t01	AT3G58750.1	21798944
AT2G42790.1	VIT_04s0008g05020.t01	AT5G55190.1	21798944
AT2G42790.1	VIT_11s0016g04780.t01	AT5G55190.1	21798944
AT3G58740.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT3G58740.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT3G58750.1	VIT_01s0011g03610.t01	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0088g00560.t01	Wine grape	cytosol	18.4	36.45
VIT_12s0142g00610.t01	Wine grape	plastid	55.66	23.05
CDY50821	Canola	cytosol	52.83	21.96
CDX79851	Canola	cytosol	52.36	21.76
Bra004720.1-P	Field mustard	cytosol	52.36	21.76
Bra007416.1-P	Field mustard	cytosol	45.75	21.6
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.42	21.33
CDY49252	Canola	cytosol	50.94	21.3
Bra007417.1-P	Field mustard	cytosol	50.94	21.3
CDY49249	Canola	cytosol	47.17	21.28
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	51.42	21.21
PGSC0003DMT400020128	Potato	plastid	51.42	21.21
CDX98329	Canola	cytosol, peroxisome, plastid	50.47	21.1
AT2G42790.1	Thale cress	cytosol	50.47	21.02
Solyc12g011000.1.1	Tomato	nucleus	50.94	21.01
Os02t0232400-01	Rice	nucleus, plastid	49.53	21.0
TraesCS5B01G416700.1	Wheat	golgi	49.53	20.87
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	50.0	20.87
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	50.0	20.87
AT3G58740.1	Thale cress	cytosol	47.17	20.83
Solyc07g055840.2.1	Tomato	nucleus, unclear	50.0	20.74
Zm00001d016248_P001	Maize	mitochondrion	49.06	20.68
TraesCS5D01G422000.1	Wheat	unclear	49.06	20.68
TraesCS5A01G413300.1	Wheat	mitochondrion	49.06	20.68
KRH73702	Soybean	cytosol, plastid	49.53	20.51
CDX71926	Canola	cytosol	46.23	20.46
Bra014554.1-P	Field mustard	cytosol	45.28	20.43
EES04804	Sorghum	mitochondrion	48.58	20.4
KRH14452	Soybean	nucleus	49.06	20.35
PGSC0003DMT400044692	Potato	plastid	49.06	20.35
CDY00587	Canola	cytosol	44.81	20.21
HORVU5Hr1G099820.5	Barley	plastid	48.58	20.12
KRH46090	Soybean	endoplasmic reticulum, nucleus	47.64	19.69
KRG98876	Soybean	nucleus, plastid	47.17	19.46
CDX89002	Canola	endoplasmic reticulum, golgi	25.47	19.08
CDX79848	Canola	cytosol	16.51	15.84
GSMUA_Achr10P...	Banana	mitochondrion	35.38	15.76
CDX71928	Canola	cytosol	44.81	11.49
VIT_13s0156g00180.t01	Wine grape	mitochondrion	19.34	8.69
HORVU0Hr1G030280.2	Barley	cytosol	5.19	6.11
CDY15651	Canola	nucleus	4.72	5.62
CDY49250	Canola	extracellular	1.42	3.7

Protein Annotations

Gene3D:1.10.580.10	MapMan:35.1	InterPro:ABC_transporter-like	ProteinID:CCB51639	ProteinID:CCB51639.1	InterPro:Citrate_synth-like_lrg_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_sf	UniProt:F6HHE3	EMBL:FN595757	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006808	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016787	GO:GO:0016887	GO:GO:0030234
GO:GO:0046912	GO:GO:0046983	GO:GO:0050790	InterPro:IPR003439	InterPro:IPR016142	InterPro:P-loop_NTPase
PFAM:PF00005	PFAM:PF00285	PRINTS:PR00143	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256
SUPFAM:SSF52540	UniParc:UPI0002107F7A	ArrayExpress:VIT_06s0080g00770	EnsemblPlantsGene:VIT_06s0080g00770	EnsemblPlants:VIT_06s0080g00770.t01	SEG:seg

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:F6HHE3]

Coordinates

chr6:+:20766324..20767896

Molecular Weight (calculated)

23062.0 Da

IEP (calculated)

8.210

GRAVY (calculated)

0.170

Length

212 amino acids

Sequence
(BLAST)

001: MVVVCIQGLD TMVGEHGTQL SGGQKQRIAI ARAILKNPRI FLLDEATSAL DAKSERIVQD ALVNVMVNRT TGKQIARVLG KAPTIAVAAY LRMAGRPLVL
101: PSSSFSYSEN FLYMLDSFDR SYKPNPQLAR VLDILFILHA EHEMNCSTAA ARHLSSSGVD VYTALAGAAG AVGALYELGL DHPDTMKSYG DLAVFYYRLQ
201: HTELALKYVG LV

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,golgi,plasma membrane,vacuole,endoplasmic reticulum,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.