CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	CDX79848	AT2G42790.1	21798944
AT3G58740.1	CDX79851	AT2G42790.1	21798944
AT3G58740.1	CDY15651	AT2G42790.1	21798944
AT3G58740.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007416.1-P	Field mustard	cytosol	92.55	96.88
CDY00587	Canola	cytosol	82.55	82.55
CDX71926	Canola	cytosol	79.15	77.66
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.62	76.91
AT3G58740.1	Thale cress	cytosol	78.09	76.46
CDY49252	Canola	cytosol	82.34	76.33
CDX98329	Canola	cytosol, peroxisome, plastid	82.13	76.13
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	82.13	75.98
CDX79851	Canola	cytosol	80.21	73.92
CDY50821	Canola	cytosol	80.0	73.73
CDX79848	Canola	cytosol	33.62	71.49
Solyc12g011000.1.1	Tomato	nucleus	77.45	70.82
Os02t0232400-01	Rice	nucleus, plastid	75.11	70.6
VIT_12s0142g00610.t01	Wine grape	plastid	76.81	70.51
PGSC0003DMT400020128	Potato	plastid	76.81	70.23
TraesCS5B01G416700.1	Wheat	golgi	74.47	69.58
TraesCS5D01G422000.1	Wheat	unclear	74.26	69.38
TraesCS5A01G413300.1	Wheat	mitochondrion	74.04	69.18
Solyc07g055840.2.1	Tomato	nucleus, unclear	74.68	68.69
EES04804	Sorghum	mitochondrion	73.62	68.51
Zm00001d016248_P001	Maize	mitochondrion	72.98	68.19
PGSC0003DMT400044692	Potato	plastid	74.04	68.1
CDY15651	Canola	nucleus	25.74	67.98
KRH14452	Soybean	nucleus	73.19	67.32
HORVU5Hr1G099820.5	Barley	plastid	72.77	66.8
KRH73702	Soybean	cytosol, plastid	72.13	66.21
GSMUA_Achr10P...	Banana	mitochondrion	67.02	66.18
KRH46090	Soybean	endoplasmic reticulum, nucleus	72.13	66.08
KRG98876	Soybean	nucleus, plastid	71.06	64.98
CDX89002	Canola	endoplasmic reticulum, golgi	38.51	63.96
CDY49250	Canola	extracellular	9.79	56.79
CDX71928	Canola	cytosol	96.17	54.66
HORVU0Hr1G030280.2	Barley	cytosol	19.36	50.56
VIT_06s0080g00770.t01	Wine grape	cytosol	21.28	47.17
CDY58554	Canola	cytosol	6.17	23.2
CDY42662	Canola	mitochondrion	22.13	22.03
CDX89047	Canola	mitochondrion	22.13	22.03
CDX95601	Canola	mitochondrion	21.49	21.26
CDX83429	Canola	mitochondrion	21.49	21.26
CDY30465	Canola	mitochondrion	21.28	21.05
CDY23428	Canola	mitochondrion	21.28	21.05
CDY69998	Canola	plastid	6.38	18.18
CDX77720	Canola	cytosol	7.45	17.24
CDX71183	Canola	mitochondrion	10.64	16.84

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078IIQ4	UniProt:A0A078IIQ4	EnsemblPlants:CDY49249
ProteinID:CDY49249	ProteinID:CDY49249.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS
InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091
GO:GO:0006099	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912
EnsemblPlantsGene:GSBRNA2T00092640001	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143
ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223	UniParc:UPI0004EE6FDE

Description

BnaA09g55280DCitrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078IIQ4]

Coordinates

chrLK032820:-:64880..67922

Molecular Weight (calculated)

51725.2 Da

IEP (calculated)

8.262

GRAVY (calculated)

-0.135

Length

470 amino acids

Sequence
(BLAST)

001: MERVNARLAV LSAHLEVSDP MPAAIKPWCT SSAGAPHGSL MGNLTIVDER TGKKYQVPVS EDGTVKSIDL KKITTGKDDK GLKLYDPGYL NTAPVRSSIS
101: YIDGDEGILR YRGYPIEELA ENCTFLEVAY LLIYGNLPSQ RQLADLEFEV SQHSAVPQGL LDIIQSMPQD AHPSGAFVSA AAMSALSLFY PDANPSHMGQ
201: DIYKSKQVRD KQIFRILGQA PTIAANAFLR TSGKPPVLPS SNFSYAENVL YMLDSMGDKS YKPNPRLARV LDIIFILHAE HEMNCSTAAA RHLASSGVDV
301: YAAISGAVGA LYGPLHGGAT DAVSKMLSEI GTVENIPDFF QCVKNKKRRL SGFGHRVYKN YDPRAKVVKK LAYEVFSIVG KDPLIEVAVA LEKAALSDEY
401: FVKRKLYPNV DFYSGLVFRA MGIPPQFIAV PRMAGYLAHW LESLDNPDTK IMRPQQVYTG VWLRHYAPVN

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.