CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89047	Canola	mitochondrion	98.94	98.94
AT3G60100.2	Thale cress	mitochondrion	90.25	90.83
CDY23428	Canola	mitochondrion	88.14	87.58
CDY30465	Canola	mitochondrion	87.71	87.16
CDX95601	Canola	mitochondrion	87.29	86.74
CDX83429	Canola	mitochondrion	87.08	86.53
PGSC0003DMT400074559	Potato	mitochondrion	82.84	83.19
VIT_13s0156g00180.t01	Wine grape	mitochondrion	82.63	82.63
KXG29695	Sorghum	mitochondrion	80.3	80.3
Solyc01g073740.2.1	Tomato	plastid	80.51	80.17
CDY58554	Canola	cytosol	21.19	80.0
Zm00001d053685_P002	Maize	mitochondrion	79.66	79.66
TraesCS6B01G194700.1	Wheat	mitochondrion	79.45	79.45
TraesCS6A01G167300.1	Wheat	mitochondrion	79.45	79.45
Os02t0194100-01	Rice	mitochondrion	79.45	79.45
Os11t0538900-01	Rice	mitochondrion	79.45	75.91
TraesCS6D01G155800.1	Wheat	mitochondrion	79.45	75.15
GSMUA_Achr4P19260_001	Banana	mitochondrion	76.69	74.03
HORVU6Hr1G033980.6	Barley	plastid	75.85	73.51
Zm00001d053684_P005	Maize	mitochondrion	75.0	73.14
Zm00001d015856_P007	Maize	mitochondrion	73.09	70.7
CDX79848	Canola	cytosol	12.08	25.79
CDY50821	Canola	cytosol	24.58	22.75
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.15	22.44
CDX79851	Canola	cytosol	24.15	22.35
CDY49252	Canola	cytosol	23.94	22.29
CDX98329	Canola	cytosol, peroxisome, plastid	23.94	22.29
CDX89002	Canola	endoplasmic reticulum, golgi	13.35	22.26
CDY49249	Canola	cytosol	22.03	22.13
CDY00587	Canola	cytosol	22.03	22.13
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.73	21.92
CDY15651	Canola	nucleus	7.84	20.79
CDX71926	Canola	cytosol	19.7	19.42
CDY49250	Canola	extracellular	2.97	17.28
CDX77720	Canola	cytosol	7.2	16.75
CDY69998	Canola	plastid	5.72	16.36
CDX71183	Canola	mitochondrion	8.69	13.8
CDX71928	Canola	cytosol	21.82	12.45

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	GO:A0A078HXR9	UniProt:A0A078HXR9	EnsemblPlants:CDY42662
ProteinID:CDY42662	ProteinID:CDY42662.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS
InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108
GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00075173001	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285
PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793
UniPathway:UPA00223	UniParc:UPI0004EDC3D1	SEG:seg	:	:	:

Description

BnaC04g22440DCitrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078HXR9]

Coordinates

chrLK032531:+:83976..87577

Molecular Weight (calculated)

52521.5 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.134

Length

472 amino acids

Sequence
(BLAST)

001: MVFLRSVSAI SRLRSRVTKQ SSLSNSVRWI QTQGSSDWDL KSQLQEIIPE QQDRLKKLKS QHGTVPVGNI TVDMVLGGMR GMTGLLWETS LLDAEEGIRF
101: RGMSIPECQK VLPAAQPGGE PLPEGLLWLL LTGKVPNKEQ VDALSKELAS RAAVPDYVYK AINALPLTAH PMTQFASGVM ALQVESEFQK AYEEGVVHKS
201: KFWEPTFEDA LNLIARVPVV ASYVYRRMFK DGSIIPLDDS LDYGANFSHM LGFDSPQMKE LMRLYVTIHS DHEGGNVSAH AGHLVGSALS DPYLAFAAAL
301: NGLAGPLHGL ANQEVLLWIK SVVEECGENI SKDQLKDYVW KTLNSGKVVP GYGHGVLRKT DPRYVCQREF ALKHLPDDPL FQLVSKLYEV VPPILTELGK
401: VKNPWPNVDA HSGVLLNYYG LTEARYYTVL FGVSRSLGIC SQLIWDRALG LPLERPKSVN MDWLDKFMSL SR

Best Arabidopsis Sequence Match ( AT3G60100.2 )
(BLAST)

001: MVFFRSVSAI SRLRSRAVQQ SSLSNSVRWL HSSELDLKSQ MQEIIPEQQD RLKKLKSEQG KVPVGNITVD MVLGGMRGMT GLLWETSLLD ADEGIRFRGM
101: SIPECQKILP SAESGEEPLP ESLLWLLLTG KVPTKEQANA LSTELAHRAA VPDYIYKAID ALPSTAHPMT QFASGVMALQ VQSEFQKAYE QGDISKSKYW
201: EPTFEDALNL IARVPVVASY VYRRMYKDGS IIPLDDSLDY GANFSHMLGF DSPQMKELMR LYVTIHSDHE GGNVSAHAGH LVGSALSDPY LSFAAALNGL
301: AGPLHGLANQ EVLLWIKLVV EECGESISKE QLKDYVWKTL NSGKVVPGYG HGVLRKTDPR YICQREFALK HLPDDPLFQL VSKLYEVVPP ILTELGKVKN
401: PWPNVDAHSG VLLNYYGLTE ARYYTVLFGV SRSLGICSQL IWDRALGLPL ERPKSVNMDW LDNFTRLNR

Arabidopsis Description

CSY5Citrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSJ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.