CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30465	Canola	mitochondrion	99.16	99.16
CDX95601	Canola	mitochondrion	97.47	97.47
CDX83429	Canola	mitochondrion	97.05	97.05
AT2G44350.2	Thale cress	mitochondrion	95.79	95.99
CDY58554	Canola	cytosol	24.0	91.2
CDY42662	Canola	mitochondrion	87.58	88.14
CDX89047	Canola	mitochondrion	86.95	87.5
PGSC0003DMT400074559	Potato	mitochondrion	85.47	86.38
VIT_13s0156g00180.t01	Wine grape	mitochondrion	83.79	84.32
Solyc01g073740.2.1	Tomato	plastid	82.95	83.12
KXG29695	Sorghum	mitochondrion	81.68	82.2
Os02t0194100-01	Rice	mitochondrion	81.47	81.99
Zm00001d053685_P002	Maize	mitochondrion	81.26	81.78
TraesCS6B01G194700.1	Wheat	mitochondrion	80.84	81.36
TraesCS6A01G167300.1	Wheat	mitochondrion	80.63	81.14
Os11t0538900-01	Rice	mitochondrion	81.05	77.94
TraesCS6D01G155800.1	Wheat	mitochondrion	81.26	77.35
Zm00001d053684_P005	Maize	mitochondrion	76.0	74.59
HORVU6Hr1G033980.6	Barley	plastid	76.0	74.13
GSMUA_Achr4P19260_001	Banana	mitochondrion	76.21	74.03
Zm00001d015856_P007	Maize	mitochondrion	74.53	72.54
CDX79848	Canola	cytosol	11.79	25.34
CDX89002	Canola	endoplasmic reticulum, golgi	13.47	22.61
CDY50821	Canola	cytosol	24.21	22.55
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	23.79	22.24
CDX79851	Canola	cytosol	23.79	22.16
CDY49252	Canola	cytosol	23.58	22.09
CDX98329	Canola	cytosol, peroxisome, plastid	23.58	22.09
CDY00587	Canola	cytosol	21.68	21.91
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.37	21.72
CDY15651	Canola	nucleus	8.0	21.35
CDY49249	Canola	cytosol	21.05	21.28
CDX71926	Canola	cytosol	19.37	19.21
CDY49250	Canola	extracellular	2.95	17.28
CDX77720	Canola	cytosol	7.16	16.75
CDY69998	Canola	plastid	5.26	15.15
CDX71183	Canola	mitochondrion	8.84	14.14
CDX71928	Canola	cytosol	20.84	11.97

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	GO:A0A078GFM5	UniProt:A0A078GFM5	EnsemblPlants:CDY23428
ProteinID:CDY23428	ProteinID:CDY23428.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS
InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108
GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00022038001	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285
PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793
UniPathway:UPA00223	UniParc:UPI0004EF4090	SEG:seg	:	:	:

Description

BnaC04g49560DCitrate synthase [Source:UniProtKB/TrEMBL;Acc:A0A078GFM5]

Coordinates

chrLK032143:+:395541..399837

Molecular Weight (calculated)

52751.5 Da

IEP (calculated)

6.992

GRAVY (calculated)

-0.196

Length

475 amino acids

Sequence
(BLAST)

001: MVFFRSVSAL ARLRSRVGQQ SSLSNSVRWI QMQSSTDMDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPAAQSGGE PLPEGLLWLL LTGKVPSKEQ VEALSQDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDDNMKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGENIS KDQLKEYVWK TLNSGKVVPG YGHGVLRKTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLDAFCKKA KASSA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.