CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	CDX79848	AT2G42790.1	21798944
AT3G58740.1	CDX79851	AT2G42790.1	21798944
AT3G58740.1	CDY15651	AT2G42790.1	21798944
AT3G58740.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49249	Canola	cytosol	54.66	96.17
Bra007416.1-P	Field mustard	cytosol	52.0	95.77
CDY00587	Canola	cytosol	46.07	81.06
CDX71926	Canola	cytosol	44.14	76.2
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.8	75.73
CDY49252	Canola	cytosol	46.07	75.15
AT3G58740.1	Thale cress	cytosol	43.53	75.0
CDX98329	Canola	cytosol, peroxisome, plastid	45.95	74.95
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	45.95	74.8
CDX79851	Canola	cytosol	44.98	72.94
CDY50821	Canola	cytosol	44.5	72.16
CDX79848	Canola	cytosol	19.23	71.95
VIT_12s0142g00610.t01	Wine grape	plastid	43.29	69.92
Solyc12g011000.1.1	Tomato	nucleus	43.41	69.84
CDY15651	Canola	nucleus	14.99	69.66
PGSC0003DMT400020128	Potato	plastid	43.05	69.26
Os02t0232400-01	Rice	nucleus, plastid	41.84	69.2
TraesCS5B01G416700.1	Wheat	golgi	41.48	68.19
TraesCS5A01G413300.1	Wheat	mitochondrion	41.48	68.19
TraesCS5D01G422000.1	Wheat	unclear	41.35	67.99
Solyc07g055840.2.1	Tomato	nucleus, unclear	41.84	67.71
EES04804	Sorghum	mitochondrion	41.23	67.52
PGSC0003DMT400044692	Potato	plastid	41.48	67.12
Zm00001d016248_P001	Maize	mitochondrion	40.63	66.8
KRH14452	Soybean	nucleus	40.75	65.95
HORVU5Hr1G099820.5	Barley	plastid	40.75	65.82
GSMUA_Achr10P...	Banana	mitochondrion	37.85	65.76
KRH46090	Soybean	endoplasmic reticulum, nucleus	40.51	65.3
KRH73702	Soybean	cytosol, plastid	40.15	64.84
KRG98876	Soybean	nucleus, plastid	39.66	63.81
CDX89002	Canola	endoplasmic reticulum, golgi	21.77	63.6
CDY49250	Canola	extracellular	5.68	58.02
HORVU0Hr1G030280.2	Barley	cytosol	10.64	48.89
VIT_06s0080g00770.t01	Wine grape	cytosol	11.49	44.81
CDY58554	Canola	cytosol	3.51	23.2
CDX89047	Canola	mitochondrion	12.45	21.82
CDY42662	Canola	mitochondrion	12.45	21.82
CDX83429	Canola	mitochondrion	12.09	21.05
CDX95601	Canola	mitochondrion	12.09	21.05
CDY30465	Canola	mitochondrion	11.97	20.84
CDY23428	Canola	mitochondrion	11.97	20.84
CDY69998	Canola	plastid	3.51	17.58
CDX71183	Canola	mitochondrion	6.17	17.17
CDX77720	Canola	cytosol	4.11	16.75

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078CA83	EnsemblPlants:CDX71928	ProteinID:CDX71928
ProteinID:CDX71928.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00155683001	InterPro:IPR016142	InterPro:IPR016143
PFAM:PF00285	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223
UniParc:UPI0004EF3F08	SEG:seg	:	:	:	:

Description

BnaC08g29460D

Coordinates

chrLK031795:+:1345825..1350690

Molecular Weight (calculated)

90999.6 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.069

Length

827 amino acids

Sequence
(BLAST)

001: MERVNARLAV LSAHLEVSDP MPAAIKPWCT SSAGAPHGSL MGNLTIVDER TGKKYQVPVS EDGTVKSIDL KKITTGKDDK GLKLYDPGYF NTAPVRSSIS
101: YIDGGEGILR YRGYPIEELA ENCTFLEVAY LLIYGNLPSQ RQLADLEFEV SQHSAVPQGL LDIIQSMPQD AHPSGAFVSA AAMSALSLFY PEANPSHMGQ
201: DIYKSKQVRD KQIFRILGQA PTIAANAFLR TSGKPPVLPS SNFSYAENVL YLLDSVGNKS YKPNPRLARV LDIVFVLHAE HEMNCSTAAA RHLASRKIYS
301: VMLKEPSAIN YFDAGEASGR RRRNLCQDFC LASCSSTSSA RSTIFCSVSF LLCDSLGDKS QPRLSLAVRR RDLCFRFGVC VTRPVTLWGT PHRSAVPVNI
401: NHSDSLSHHV CNSGPMTVKY STRVVATPQI PRSMSSRLDL PSASPTRSTA ASAIPVTHAS SSRYSCSEDL HRMPLLRPSQ SLPSSIVSGI LKSCVVGIPP
501: FTRLSGLESR CLLSLSAPRS ATTLFISKVY RFGSLLWVSE KISWVSTACS GEHPSPPFDV PISSPPISTF GVSPRYSPSP VKRMVVSNPR GLCYAIIVIP
601: LFYEDCFGGY TVSAYGFNLF LYREEYFATM PPLYERRCFL GSITEALLQF THRGVDVYAA ISGAVGALYG PLHGGATDAV SKMLSEIGTV ENIPDFIQCV
701: KNKKRRLSGF GHRVYKNYDP RAKVVKKLAY EVFSIVGKDP LIEVAVALEK AALSDEYFVK RKLYPNVDFY SGLVYRAMGI PPQFIAVPRM AGYLAHWLES
801: LDDPDTKIMR PQQVYTGVWL RHYAPVK

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.