CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83429	Canola	mitochondrion	92.0	24.21
CDX95601	Canola	mitochondrion	92.0	24.21
CDY23428	Canola	mitochondrion	91.2	24.0
CDY30465	Canola	mitochondrion	90.4	23.79
CDY42662	Canola	mitochondrion	80.0	21.19
CDX89047	Canola	mitochondrion	80.0	21.19
KRH13859	Soybean	mitochondrion	63.2	16.74
KRH43565	Soybean	mitochondrion	62.4	16.53
CDY69998	Canola	plastid	9.6	7.27
CDY49249	Canola	cytosol	23.2	6.17
CDY00587	Canola	cytosol	21.6	5.74
CDX98329	Canola	cytosol, peroxisome, plastid	23.2	5.72
CDY49252	Canola	cytosol	23.2	5.72
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	23.2	5.71
CDX79851	Canola	cytosol	23.2	5.69
CDY50821	Canola	cytosol	23.2	5.69
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.2	5.68
CDX71926	Canola	cytosol	20.8	5.43
CDX77720	Canola	cytosol	6.4	3.94
AT2G11270.1	Thale cress	mitochondrion	2.4	3.61
CDX71928	Canola	cytosol	23.2	3.51
CDX89002	Canola	endoplasmic reticulum, golgi	6.4	2.83
CDX71183	Canola	mitochondrion	6.4	2.69
CDY15651	Canola	nucleus	0.0	0.0
CDX79848	Canola	cytosol	0.0	0.0
CDY49250	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY58554	EnsemblPlantsGene:GSBRNA2T00024839001	Gene3D:1.10.580.10	GO:A0A078J3Y2	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0046912	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_sf	InterPro:IPR016142
ncoils:Coil	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	PFAM:PF00285	ProteinID:CDY58554	ProteinID:CDY58554.1
SUPFAM:SSF48256	UniParc:UPI0004EE3886	UniPathway:UPA00223	UniProt:A0A078J3Y2	MapMan:35.1	:

Description

BnaAnng15280DBnaAnng15280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3Y2]

Coordinates

chrLK033678:-:32743..33840

Molecular Weight (calculated)

13647.6 Da

IEP (calculated)

5.731

GRAVY (calculated)

-0.178

Length

125 amino acids

Sequence
(BLAST)

001: MQDLKSQLQE LIPEQQDRLK KLKSEHGKVQ LGNITVDMVI GGMRGMTGLL WETSLLDPEE GIRFRGLGTV ARGSIVPSKE QVEALSKDLA NRAAVPDYVY
101: NAIDALPSTA HPMTQFASGV MALQV

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.