CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79848
CDX79851
CDY15651
CDY50821

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58740.1	CDX79848	AT2G42790.1	21798944
AT3G58740.1	CDX79851	AT2G42790.1	21798944
AT3G58740.1	CDY15651	AT2G42790.1	21798944
AT3G58740.1	CDY50821	AT2G42790.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49249	Canola	cytosol	77.66	79.15
CDY00587	Canola	cytosol	75.99	77.45
AT3G58740.1	Thale cress	cytosol	72.23	72.08
CDY49252	Canola	cytosol	75.37	71.2
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	75.57	70.84
CDX98329	Canola	cytosol, peroxisome, plastid	74.53	70.41
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	74.53	70.28
CDX79851	Canola	cytosol	72.86	68.43
CDY50821	Canola	cytosol	72.44	68.04
VIT_12s0142g00610.t01	Wine grape	plastid	71.19	66.6
Solyc12g011000.1.1	Tomato	nucleus	70.77	65.95
Os02t0232400-01	Rice	nucleus, plastid	68.68	65.8
PGSC0003DMT400020128	Potato	plastid	70.35	65.56
PGSC0003DMT400044692	Potato	plastid	69.52	65.17
Solyc07g055840.2.1	Tomato	nucleus, unclear	69.52	65.17
TraesCS5B01G416700.1	Wheat	golgi	67.85	64.61
TraesCS5D01G422000.1	Wheat	unclear	67.64	64.41
KRH14452	Soybean	nucleus	68.68	64.38
TraesCS5A01G413300.1	Wheat	mitochondrion	67.43	64.21
EES04804	Sorghum	mitochondrion	67.64	64.16
Zm00001d016248_P001	Maize	mitochondrion	67.01	63.82
CDX79848	Canola	cytosol	29.23	63.35
KRH73702	Soybean	cytosol, plastid	67.43	63.09
GSMUA_Achr10P...	Banana	mitochondrion	62.42	62.82
CDX89002	Canola	endoplasmic reticulum, golgi	36.74	62.19
KRH46090	Soybean	endoplasmic reticulum, nucleus	66.6	62.18
HORVU5Hr1G099820.5	Barley	plastid	66.39	62.11
KRG98876	Soybean	nucleus, plastid	65.14	60.7
CDY15651	Canola	nucleus	21.92	58.99
HORVU0Hr1G030280.2	Barley	cytosol	19.42	51.67
CDY49250	Canola	extracellular	7.93	46.91
VIT_06s0080g00770.t01	Wine grape	cytosol	20.46	46.23
CDX71928	Canola	cytosol	76.2	44.14
CDY58554	Canola	cytosol	5.43	20.8
CDY42662	Canola	mitochondrion	19.42	19.7
CDX89047	Canola	mitochondrion	19.42	19.7
CDY30465	Canola	mitochondrion	19.21	19.37
CDY23428	Canola	mitochondrion	19.21	19.37
CDX83429	Canola	mitochondrion	19.21	19.37
CDX95601	Canola	mitochondrion	19.21	19.37
CDX71183	Canola	mitochondrion	11.27	18.18
CDY69998	Canola	plastid	6.05	17.58
CDX77720	Canola	cytosol	6.26	14.78

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:5.7.3.6.1	GO:A0A078C4J3	EnsemblPlants:CDX71926	ProteinID:CDX71926
ProteinID:CDX71926.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ
InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00155677001	InterPro:IPR016142
InterPro:IPR016143	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	UniPathway:UPA00223	UniParc:UPI0004EC1F47	SEG:seg	:

Description

BnaC08g29480D

Coordinates

chrLK031795:+:1335129..1338157

Molecular Weight (calculated)

52474.3 Da

IEP (calculated)

7.708

GRAVY (calculated)

-0.072

Length

479 amino acids

Sequence
(BLAST)

001: MERLNARLAV LSAHLEVSDP MPAATEPWCK SIAGPLAGNL TIVDERTGKK YQVPVSEEGT VKSIDLKKIT SGAHDKGIKL YDPGYLNTAP VRSSVSCTDG
101: DEGTLRYRGY LIEELGESST FLEVAYLLIY GNLPSQSQLA DWEFAVSQHS AVPQGILDII QSMPHDSHPI GSLASAISVL SLFHPDANPS LSGLDIYKST
201: QVRDKQIFRI LGQAPTIAAA AFLKTAGKPP VLPLSNLSYA ENLLYMMESM GNKSYKPNPR LARVLDIIFI LHAEHEMNCS TAAARHLASS GVDVYTAIAG
301: AVGAIGGPLH GGATKTVPQM LFEIGTVENI PEFIESVKNK NRKLSGFGHR IYKNYDPRAR VVKRLAEEVF SIVGKDPLFE VAVALEKTAL SDEYFVKRKL
401: YPNVDFYCGL VYRAMGVPPH FTAVARMAGY LAHWRESLDD PDTKIIRPQQ PFSTINVTLV KVRFSAFPRM PGIPLTFPE

Best Arabidopsis Sequence Match ( AT2G42790.1 )
(BLAST)

001: MEISERVRAR LAVLSGHLSE GKQDSPAIER WCTSADTSVA PLGSLKGTLT IVDERTGKNY KVPVSDDGTV KAVDFKKIVT GKEDKGLKLY DPGYLNTAPV
101: RSSISYIDGD EGILRYRGYP IEEMAENSTF LEVAYLLMYG NLPSESQLSD WEFAVSQHSA VPQGVLDIIQ SMPHDAHPMG VLVSAMSALS IFHPDANPAL
201: RGQDIYDSKQ VRDKQIIRII GKAPTIAAAA YLRMAGRPPV LPSGNLPYAD NFLYMLDSLG NRSYKPNPRL ARVLDILFIL HAEHEMNCST AAARHLASSG
301: VDVYTAVAGA VGALYGPLHG GANEAVLKML SEIGTVENIP EFIEGVKNRK RKMSGFGHRV YKNYDPRAKV IKNLADEVFS IVGKDPLIEV AVALEKAALS
401: DDYFVKRKLY PNVDFYSGLI YRAMGFPPEF FTVLFAIPRM AGYLSHWKES LDDPDTKIMR PQQVYTGVWL RHYTPVRERI VTDDSKESDK LGQVATSNAS
501: RRRLAGSSV

Arabidopsis Description

CSY3Citrate synthase [Source:UniProtKB/TrEMBL;Acc:Q0WUX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.