CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83429	Canola	mitochondrion	99.58	99.58
Bra000351.1-P	Field mustard	cytosol	91.58	97.97
CDY23428	Canola	mitochondrion	97.47	97.47
CDY30465	Canola	mitochondrion	97.26	97.26
AT2G44350.2	Thale cress	mitochondrion	96.21	96.41
CDY58554	Canola	cytosol	24.21	92.0
CDY42662	Canola	mitochondrion	86.74	87.29
CDX89047	Canola	mitochondrion	86.32	86.86
PGSC0003DMT400074559	Potato	mitochondrion	84.63	85.53
VIT_13s0156g00180.t01	Wine grape	mitochondrion	84.0	84.53
KXG29695	Sorghum	mitochondrion	82.53	83.05
Zm00001d053685_P002	Maize	mitochondrion	82.11	82.63
Os02t0194100-01	Rice	mitochondrion	82.11	82.63
Solyc01g073740.2.1	Tomato	plastid	82.32	82.49
TraesCS6B01G194700.1	Wheat	mitochondrion	81.68	82.2
TraesCS6A01G167300.1	Wheat	mitochondrion	81.47	81.99
Os11t0538900-01	Rice	mitochondrion	81.68	78.54
TraesCS6D01G155800.1	Wheat	mitochondrion	82.11	78.16
Zm00001d053684_P005	Maize	mitochondrion	76.63	75.21
HORVU6Hr1G033980.6	Barley	plastid	76.63	74.74
GSMUA_Achr4P19260_001	Banana	mitochondrion	76.63	74.44
Zm00001d015856_P007	Maize	mitochondrion	75.16	73.16
CDX79848	Canola	cytosol	12.0	25.79
CDY50821	Canola	cytosol	24.42	22.75
CDX89002	Canola	endoplasmic reticulum, golgi	13.47	22.61
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.0	22.44
CDX79851	Canola	cytosol	24.0	22.35
CDY49252	Canola	cytosol	23.79	22.29
CDX98329	Canola	cytosol, peroxisome, plastid	23.79	22.29
CDY00587	Canola	cytosol	21.89	22.13
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.58	21.92
CDY15651	Canola	nucleus	8.21	21.91
CDY49249	Canola	cytosol	21.26	21.49
CDX71926	Canola	cytosol	19.37	19.21
CDY49250	Canola	extracellular	3.16	18.52
CDX77720	Canola	cytosol	7.16	16.75
CDY69998	Canola	plastid	5.47	15.76
CDX71183	Canola	mitochondrion	8.84	14.14
CDX71928	Canola	cytosol	21.05	12.09

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	GO:A0A078E2T0	EnsemblPlants:CDX95601	ProteinID:CDX95601
ProteinID:CDX95601.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk
InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108	GO:GO:0006091
GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0046912	EnsemblPlantsGene:GSBRNA2T00101469001	InterPro:IPR016142	InterPro:IPR016143	PFAM:PF00285	PRINTS:PR00143
ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniPathway:UPA00223
UniParc:UPI0004EEB3C2	SEG:seg	:	:	:	:

Description

BnaC03g24820D

Coordinates

chrLK031890:+:188910..193334

Molecular Weight (calculated)

52736.6 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.193

Length

475 amino acids

Sequence
(BLAST)

001: MVFFRSVAAF TRLRSRVGQQ SSLGSSVRWI QMQSSTDVDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPAAQSGGE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDAKMKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGENIS KDQLKEYVWK TLNSGKVVPG YGHGVLRKTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAYCKKA KASSP

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.