Factsheet for Os02t0194100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 12746528
plastid: 17189339
mitochondrion: 19010998
extracellular: 19038476
mitochondrion: 23027867
golgi: 25047511
plasma membrane: 27800704

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 12746528 doi

JL Heazlewood, KA Howell, J Whelan, AH Millar

Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG29695	Sorghum	mitochondrion	94.7	94.7
Zm00001d053685_P002	Maize	mitochondrion	94.28	94.28
TraesCS6A01G167300.1	Wheat	mitochondrion	93.01	93.01
TraesCS6B01G194700.1	Wheat	mitochondrion	92.8	92.8
Os11t0538900-01	Rice	mitochondrion	96.82	92.51
TraesCS6D01G155800.1	Wheat	mitochondrion	93.22	88.18
Zm00001d053684_P005	Maize	mitochondrion	88.14	85.95
Bra000351.1-P	Field mustard	cytosol	78.6	83.56
HORVU6Hr1G033980.6	Barley	plastid	86.02	83.37
VIT_13s0156g00180.t01	Wine grape	mitochondrion	82.84	82.84
Zm00001d015856_P007	Maize	mitochondrion	84.96	82.17
CDX95601	Canola	mitochondrion	82.63	82.11
CDX83429	Canola	mitochondrion	82.42	81.89
AT2G44350.2	Thale cress	mitochondrion	82.2	81.86
Bra037657.1-P	Field mustard	mitochondrion	82.2	81.68
CDY30465	Canola	mitochondrion	82.2	81.68
CDY23428	Canola	mitochondrion	81.99	81.47
PGSC0003DMT400074559	Potato	mitochondrion	79.87	80.21
CDX89047	Canola	mitochondrion	79.66	79.66
Bra014513.1-P	Field mustard	mitochondrion	79.66	79.66
CDY42662	Canola	mitochondrion	79.45	79.45
AT3G60100.2	Thale cress	mitochondrion	77.97	78.46
Solyc01g073740.2.1	Tomato	plastid	77.33	77.0
GSMUA_Achr4P19260_001	Banana	mitochondrion	78.6	75.87
KRH13859	Soybean	mitochondrion	71.61	71.61
KRH43565	Soybean	mitochondrion	71.4	71.4
Os11t0623601-00	Rice	extracellular	9.96	55.29
Os02t0232400-01	Rice	nucleus, plastid	22.46	21.2

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	EntrezGene:4328598	EMBL:AK243001	ProteinID:BAD15405.1
ProteinID:BAF08089.1	ProteinID:BAS77435.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS
InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108
GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	EnsemblPlantsGene:Os02g0194100	EnsemblPlants:Os02t0194100-01
PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	UniProt:Q7F8R1
SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI0000358A1E	RefSeq:XP_015627140.1	SEG:seg	:

Description

Similar to Citrate synthase (EC 4.1.3.7). (Os02t0194100-01)

Coordinates

chr2:-:5242740..5249321

Molecular Weight (calculated)

52232.3 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.132

Length

472 amino acids

Sequence
(BLAST)

001: MAFFRGLTAV SRLRSRVAQE ATTLGGVRWL QMQSASDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVLGGMR GMTGMLWETS LLDPDEGIRF
101: RGLSIPECQK VLPTAVKDGE PLPEGLLWLL LTGKVPTKEQ VDALSKELAS RSSVPGHVYE AIDALPVTAH PMTQFTTGVM ALQVESEFQK AYDKGMSKSK
201: FWEPTYEDCL NLIARLPAVA SYVYRRIFKG GKTIAADNAL DYAANFSHML GFDDPKMLEL MRLYITIHTD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VIGETGSDVT TDQLKEYVWK TLKSGKVVPG FGHGVLRKTD PRYTCQREFA LKYLPEDPLF QLVSKLYEVV PPILTELGKV
401: KNPWPNVDAH SGVLLNHFGL SEARYYTVLF GVSRSIGIGS QLIWDRALGL PLERPKSVTM EWLENHCKKV AA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.