Factsheet for GSMUA_Achr4P19260_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G167300.1	Wheat	mitochondrion	76.69	79.45
TraesCS6B01G194700.1	Wheat	mitochondrion	76.69	79.45
VIT_13s0156g00180.t01	Wine grape	mitochondrion	76.69	79.45
Os02t0194100-01	Rice	mitochondrion	75.87	78.6
KXG29695	Sorghum	mitochondrion	75.87	78.6
Zm00001d053685_P002	Maize	mitochondrion	75.05	77.75
Bra000351.1-P	Field mustard	cytosol	70.55	77.7
Bra014513.1-P	Field mustard	mitochondrion	74.23	76.91
CDX89047	Canola	mitochondrion	74.23	76.91
CDY42662	Canola	mitochondrion	74.03	76.69
CDX95601	Canola	mitochondrion	74.44	76.63
PGSC0003DMT400074559	Potato	mitochondrion	73.42	76.38
CDY30465	Canola	mitochondrion	74.03	76.21
CDY23428	Canola	mitochondrion	74.03	76.21
CDX83429	Canola	mitochondrion	74.03	76.21
Bra037657.1-P	Field mustard	mitochondrion	74.03	76.21
AT2G44350.2	Thale cress	mitochondrion	73.62	75.95
AT3G60100.2	Thale cress	mitochondrion	72.8	75.91
Os11t0538900-01	Rice	mitochondrion	75.87	75.1
TraesCS6D01G155800.1	Wheat	mitochondrion	75.66	74.15
HORVU6Hr1G033980.6	Barley	plastid	72.8	73.1
Solyc01g073740.2.1	Tomato	plastid	70.55	72.78
Zm00001d053684_P005	Maize	mitochondrion	71.57	72.31
KRH43565	Soybean	mitochondrion	66.46	68.86
KRH13859	Soybean	mitochondrion	66.26	68.64
Zm00001d015856_P007	Maize	mitochondrion	67.69	67.83
GSMUA_Achr10P...	Banana	mitochondrion	20.45	21.01
GSMUA_Achr3P03660_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	9.82	18.18

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase
InterPro:Citrate_synthase_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0046912	EnsemblPlantsGene:GSMUA_Achr4G19260_001
EnsemblPlants:GSMUA_Achr4P19260_001	EnsemblPlants:GSMUA_Achr4T19260_001	InterPro:IPR016142	InterPro:IPR016143	UniProt:M0SQ89	PFAM:PF00285
PRINTS:PR00143	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	UniParc:UPI000294919F	SEG:seg

Description

Citrate synthase, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr4G19260_001]

Coordinates

chr4:-:20311182..20321127

Molecular Weight (calculated)

54900.5 Da

IEP (calculated)

7.942

GRAVY (calculated)

-0.133

Length

489 amino acids

Sequence
(BLAST)

001: MVFFRSVAAL SKLRSRLAHQ STSLGSIRWL QVQSTSDLDL HAQLKDMIPE QQECLKKLKA EHGKVQLGNI TVDMVISGMR GMTGLLWETS LLDPDEGIRF
101: RGLSIPECQK LLPAASPGGE PLPEGLLWLL LTGKVPNKEQ VDGLSAELQS RAKVPDNVFR AIDALPVTAH PMTQFTSGVM ALQVESEFQK AYEKGMPKTK
201: FWEPTYEDSM NLIARLPTVA SYVYRRIYKD GQIIPADSSL DYAANFSHML GFDDPKMLEL MRLYVTIHSD HEGGNVSAHT AHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIES LVKECGEDIT TDQLKDYVWK TLKSGKKKLL FYFLLLAIYA RYRANSCPWL WAWSSTEDRS RYTCQREFAL KHLPDDPFFK
401: LVSKLYEVVP PILTELGKVK NPWPNVDAHS GVLLKYFGLS EARYFTVLFG VSRSIGIGSQ LIWDRALGLP LERPKSVTMD WLRTYTKAT

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.