Factsheet for Bra000351.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83429	Canola	mitochondrion	98.42	92.0
CDX95601	Canola	mitochondrion	97.97	91.58
Bra037657.1-P	Field mustard	mitochondrion	96.62	90.32
AT2G44350.2	Thale cress	mitochondrion	95.05	89.03
Bra014513.1-P	Field mustard	mitochondrion	86.71	81.57
PGSC0003DMT400074559	Potato	mitochondrion	85.81	81.06
VIT_13s0156g00180.t01	Wine grape	mitochondrion	84.68	79.66
KXG29695	Sorghum	mitochondrion	84.23	79.24
Zm00001d053685_P002	Maize	mitochondrion	84.01	79.03
Os02t0194100-01	Rice	mitochondrion	83.56	78.6
TraesCS6B01G194700.1	Wheat	mitochondrion	83.33	78.39
TraesCS6A01G167300.1	Wheat	mitochondrion	83.11	78.18
Solyc01g073740.2.1	Tomato	plastid	83.33	78.06
Os11t0538900-01	Rice	mitochondrion	83.56	75.1
TraesCS6D01G155800.1	Wheat	mitochondrion	82.88	73.75
HORVU6Hr1G033980.6	Barley	plastid	79.95	72.9
Zm00001d053684_P005	Maize	mitochondrion	77.93	71.49
GSMUA_Achr4P19260_001	Banana	mitochondrion	77.7	70.55
Zm00001d015856_P007	Maize	mitochondrion	76.58	69.67
KRH13859	Soybean	mitochondrion	72.3	68.01
KRH43565	Soybean	mitochondrion	72.07	67.8
Bra004720.1-P	Field mustard	cytosol	25.23	21.96
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.55	21.46
Bra007417.1-P	Field mustard	cytosol	24.32	21.3
Bra014554.1-P	Field mustard	cytosol	22.3	21.06
Bra007416.1-P	Field mustard	cytosol	21.17	20.94

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	EnsemblPlantsGene:Bra000351	EnsemblPlants:Bra000351.1	EnsemblPlants:Bra000351.1-P
InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004108	GO:GO:0006091	GO:GO:0006099
GO:GO:0006101	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912
InterPro:IPR016142	InterPro:IPR016143	UniProt:M4C823	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480
PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI000253FDC7	SEG:seg

Description

AT2G44350 (E=9e-234) ATCS, CSY4 | ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase

Coordinates

chrA03:+:10691013..10694550

Molecular Weight (calculated)

49255.3 Da

IEP (calculated)

6.450

GRAVY (calculated)

-0.211

Length

444 amino acids

Sequence
(BLAST)

001: MQSSTDVDLK SQLQELIPEQ QDRLKKLKSE HGKVQLGNIT VDMVIGGMRG MTGLLWETSL LDPEEGIRFR GLSIPECQKV LPVAQSGGEP LPEGLLWLLL
101: TGKVPSKEQV EALSKDLANR AAVPDYVYNA IDALPSTAHP MTQFASGVMA LQVQSEFQKA YENGIHKSKF WEPTYEDCLN LIARVPVVAA YVYRRMYKNG
201: DSIPSDKSLD YGANFSHMLG FDDAKMKELM RLYITIHSDH EGGNVSAHTG HLVGSALSDP YLSFAAALNG LAGPLHGLAN QEVLLWIKSV VEECGENISK
301: DQLKEYVWKT LNSGKVVPGY GHGVLRKTDP RYVCQREFAL KHLPDDPLFQ LVSKLYEVVP PVLTELGKVK NPWPNVDAHS GVLLNHYGLT EARYYTVLFG
401: VSRSLGICSQ LIWDRALGLA LERPKSVTMD WLETYCEKAK ASSP

Best Arabidopsis Sequence Match ( AT2G44350.3 )
(BLAST)

001: MVFFRSVSAF TRLRSRVQGQ QSSLSNSVRW IQMQSSTDLD LKSQLQELIP EQQDRLKKLK SEHGKVQLGN ITVDMVIGGM RGMTGLLWET SLLDPEEGIR
101: FRGLSIPECQ KVLPTAQSGA EPLPEGLLWL LLTGKVPSKE QVEALSKDLA NRAAVPDYVY NAIDALPSTA HPMTQFASGV MALQVQSEFQ KAYENGIHKS
201: KFWEPTYEDC LNLIARVPVV AAYVYRRMYK NGDSIPSDKS LDYGANFSHM LGFDDEKVKE LMRLYITIHS DHEGGNVSAH TGHLVGSALS DPYLSFAAAL
301: NGLAGPLHGL ANQEVLLWIK SVVEECGEDI SKEQLKEYVW KTLNSGKVIP GYGHGVLRNT DPRYVCQREF ALKHLPDDPL FQLVSKLYEV VPPVLTELGK
401: VKNPWPNVDA HSGVLLNHYG LTEARYYTVL FGVSRSLGIC SQLIWDRALG LALERPKSVT MDWLEAHCKK ASSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.