CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053685_P002	Maize	mitochondrion	98.52	98.52
Os02t0194100-01	Rice	mitochondrion	94.7	94.7
TraesCS6B01G194700.1	Wheat	mitochondrion	91.74	91.74
TraesCS6A01G167300.1	Wheat	mitochondrion	91.53	91.53
Os11t0538900-01	Rice	mitochondrion	95.13	90.89
Zm00001d053684_P005	Maize	mitochondrion	92.16	89.88
TraesCS6D01G155800.1	Wheat	mitochondrion	91.95	86.97
Zm00001d015856_P007	Maize	mitochondrion	88.98	86.07
Bra000351.1-P	Field mustard	cytosol	79.24	84.23
VIT_13s0156g00180.t01	Wine grape	mitochondrion	83.26	83.26
HORVU6Hr1G033980.6	Barley	plastid	85.17	82.55
CDX95601	Canola	mitochondrion	83.05	82.53
CDX83429	Canola	mitochondrion	82.84	82.32
CDY30465	Canola	mitochondrion	82.42	81.89
Bra037657.1-P	Field mustard	mitochondrion	82.42	81.89
AT2G44350.2	Thale cress	mitochondrion	82.2	81.86
CDY23428	Canola	mitochondrion	82.2	81.68
CDX89047	Canola	mitochondrion	80.51	80.51
Bra014513.1-P	Field mustard	mitochondrion	80.51	80.51
PGSC0003DMT400074559	Potato	mitochondrion	80.08	80.43
CDY42662	Canola	mitochondrion	80.3	80.3
AT3G60100.2	Thale cress	mitochondrion	79.03	79.53
Solyc01g073740.2.1	Tomato	plastid	77.33	77.0
GSMUA_Achr4P19260_001	Banana	mitochondrion	78.6	75.87
KRH13859	Soybean	mitochondrion	71.19	71.19
KRH43565	Soybean	mitochondrion	70.97	70.97
EES04804	Sorghum	mitochondrion	22.46	20.99

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	MapMan:2.3.1	UniProt:A0A194YPD4	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk	InterPro:Citrate_synthase_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004108	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143
EnsemblPlants:KXG29695	ProteinID:KXG29695	ProteinID:KXG29695.1	PFAM:PF00285	PRINTS:PR00143	ScanProsite:PS00480
PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	EnsemblPlantsGene:SORBI_3004G078000	SUPFAM:SSF48256	TIGRFAMs:TIGR01793	UniParc:UPI0007F290B6
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6410017..6415370

Molecular Weight (calculated)

52418.6 Da

IEP (calculated)

7.421

GRAVY (calculated)

-0.170

Length

472 amino acids

Sequence
(BLAST)

001: MAFFRGLTAV SRLRSRMAQE ATTLGGVRWL QMQSASDLDL KSQMQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVLGGMR GMTGMLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAVKGGE PLPEGLLWLL LTGKVPTKEQ VDALSKELLA RSTVPAHVYK AIDALPVTAH PMTQFTTGVM ALQVESEFQK AYDNGLPKSK
201: FWEPTYEDCL NLIARLPPVA SYVYRRIFKG GKSIEADNSL DYAANFSHML GFDDPKMLEL MRLYVTIHTD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VIEETGSDVT TDQLKDYVWK TLKSGKVVPG FGHGVLRKTD PRYSCQREFA LKHLPEDPLF QLVSKLYEVV PPILTELGKV
401: KNPWPNVDAH SGVLLNHFGL SEARYYTVLF GVSRSMGIGS QLIWDRALGL PLERPKSVTM EWLENYCKNK AA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.