Factsheet for VIT_13s0156g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074559	Potato	mitochondrion	86.65	87.02
Bra000351.1-P	Field mustard	cytosol	79.66	84.68
CDX95601	Canola	mitochondrion	84.53	84.0
CDX83429	Canola	mitochondrion	84.32	83.79
CDY23428	Canola	mitochondrion	84.32	83.79
AT2G44350.2	Thale cress	mitochondrion	84.11	83.76
AT3G60100.2	Thale cress	mitochondrion	83.05	83.58
Bra037657.1-P	Field mustard	mitochondrion	84.11	83.58
CDY30465	Canola	mitochondrion	84.11	83.58
KXG29695	Sorghum	mitochondrion	83.26	83.26
Solyc01g073740.2.1	Tomato	plastid	83.47	83.12
Bra014513.1-P	Field mustard	mitochondrion	83.05	83.05
CDX89047	Canola	mitochondrion	83.05	83.05
Os02t0194100-01	Rice	mitochondrion	82.84	82.84
Zm00001d053685_P002	Maize	mitochondrion	82.63	82.63
CDY42662	Canola	mitochondrion	82.63	82.63
TraesCS6B01G194700.1	Wheat	mitochondrion	81.78	81.78
TraesCS6A01G167300.1	Wheat	mitochondrion	81.36	81.36
Os11t0538900-01	Rice	mitochondrion	83.47	79.76
TraesCS6D01G155800.1	Wheat	mitochondrion	81.78	77.35
GSMUA_Achr4P19260_001	Banana	mitochondrion	79.45	76.69
Zm00001d053684_P005	Maize	mitochondrion	78.39	76.45
KRH43565	Soybean	mitochondrion	75.0	75.0
KRH13859	Soybean	mitochondrion	75.0	75.0
Zm00001d015856_P007	Maize	mitochondrion	76.48	73.98
HORVU6Hr1G033980.6	Barley	plastid	75.85	73.51
VIT_12s0142g00610.t01	Wine grape	plastid	24.79	22.85
VIT_06s0080g00770.t01	Wine grape	cytosol	8.69	19.34
VIT_03s0088g00560.t01	Wine grape	cytosol	3.18	14.02

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:100261432	wikigene:100261432	MapMan:2.3.1	ProteinID:CBI32162
ProteinID:CBI32162.3	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub	InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_euk
InterPro:Citrate_synthase_sf	ncoils:Coil	UniProt:D7TNT9	EMBL:FN596003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004108	GO:GO:0005575	GO:GO:0006091	GO:GO:0006099	GO:GO:0006101	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0046912
InterPro:IPR016142	InterPro:IPR016143	EntrezGene:LOC100261432	wikigene:LOC100261432	PFAM:PF00285	PRINTS:PR00143
ScanProsite:PS00480	PANTHER:PTHR11739	PANTHER:PTHR11739:SF8	SUPFAM:SSF48256	TIGR:TC59677	TIGR:TC62941
TIGRFAMs:TIGR01793	UniParc:UPI00015CC8D7	ArrayExpress:VIT_13s0156g00180	EnsemblPlantsGene:VIT_13s0156g00180	EnsemblPlants:VIT_13s0156g00180.t01	unigene:Vvi.8366
RefSeq:XP_002271451	RefSeq:XP_002271451.1	SEG:seg	:	:	:

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:D7TNT9]

Coordinates

chr13:+:23934222..23944075

Molecular Weight (calculated)

52391.5 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.153

Length

472 amino acids

Sequence
(BLAST)

001: MVFFRSVSAL SKLRSRLAQP SSLNGSVRWL QVQTCSDLDL HSQLKELIPE QQERLKKLKA ECGKIQLGNI TVDMVLGGMR GMTGLLWETS LLDPDEGIRF
101: RGMSIPECQK VLPNATPGGE PLPEGLLWLL LTGKVPTKGQ VDALSKELST RATVPDHVYK AIDALPQSAH PMTQFATGVM ALQVQSEFQK AYEKGIPKSK
201: YWEPTYEDSL SLIAQVPVVA AYVYRRVYKN GQIIPKDDSL DYGANFSHML GFDSPKMQEL MRLYVTIHSD HEGGNVSAHT GHLVASALAD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVDECGENIS TEQLKDYVWK TLKSGKVVPG FGHGVLRKTD PRYMCQREFA LKHLPDDPLF QLVSKLYEVV PPILTELGKV
401: KNPWPNVDAH SGVLLNHFGL HEARYFTVLF GVSRSIGICS QLIWDRALGL PLERPKSVTM EWLENHCKKA AA

Best Arabidopsis Sequence Match ( AT2G44350.1 )
(BLAST)

001: MVFFRSVSAF TRLRSRVGQQ SSLSNSVRWI QMQSSTDLDL KSQLQELIPE QQDRLKKLKS EHGKVQLGNI TVDMVIGGMR GMTGLLWETS LLDPEEGIRF
101: RGLSIPECQK VLPTAQSGAE PLPEGLLWLL LTGKVPSKEQ VEALSKDLAN RAAVPDYVYN AIDALPSTAH PMTQFASGVM ALQVQSEFQK AYENGIHKSK
201: FWEPTYEDCL NLIARVPVVA AYVYRRMYKN GDSIPSDKSL DYGANFSHML GFDDEKVKEL MRLYITIHSD HEGGNVSAHT GHLVGSALSD PYLSFAAALN
301: GLAGPLHGLA NQEVLLWIKS VVEECGEDIS KEQLKEYVWK TLNSGKVIPG YGHGVLRNTD PRYVCQREFA LKHLPDDPLF QLVSKLYEVV PPVLTELGKV
401: KNPWPNVDAH SGVLLNHYGL TEARYYTVLF GVSRSLGICS QLIWDRALGL ALERPKSVTM DWLEAHCKKA SSA

Arabidopsis Description

CSY4Citrate synthase 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P20115]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.