Factsheet for VIT_12s0142g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g03610.t01
VIT_02s0012g01800.t01
VIT_04s0008g05020.t01
VIT_06s0080g00770.t01
VIT_08s0040g00290.t01
VIT_09s0002g04280.t01
VIT_11s0016g04780.t01
VIT_12s0142g00610.t01
VIT_18s0001g00490.t01
VIT_18s0001g12240.t01
VIT_18s0041g00730.t01
VIT_18s0072g01010.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42790.1	VIT_18s0001g12240.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0041g00730.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0072g01010.t01	AT1G12920.1	21798944
AT2G42790.1	VIT_18s0001g00490.t01	AT1G76150.1	21798944
AT2G42790.1	VIT_02s0012g01800.t01	AT2G35500.1	21798944
AT2G42790.1	VIT_09s0002g04280.t01	AT3G16120.1	21798944
AT2G42790.1	VIT_08s0040g00290.t01	AT3G56900.1	21798944
AT2G42790.1	VIT_06s0080g00770.t01	AT3G58750.1	21798944
AT2G42790.1	VIT_12s0142g00610.t01	AT3G58750.1	21798944
AT2G42790.1	VIT_04s0008g05020.t01	AT5G55190.1	21798944
AT2G42790.1	VIT_11s0016g04780.t01	AT5G55190.1	21798944
AT3G58740.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT3G58740.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT3G58750.1	VIT_01s0011g03610.t01	AT1G25420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79848	Canola	cytosol	37.89	87.78
CDY15651	Canola	nucleus	29.88	85.96
PGSC0003DMT400020128	Potato	plastid	85.16	84.82
Solyc12g011000.1.1	Tomato	nucleus	84.57	84.24
Solyc07g055840.2.1	Tomato	nucleus, unclear	83.79	83.95
PGSC0003DMT400044692	Potato	plastid	83.4	83.56
GSMUA_Achr10P...	Banana	mitochondrion	77.34	83.19
AT3G58750.1	Thale cress	endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, vacuole	82.42	82.1
CDX79851	Canola	cytosol	81.64	81.96
Bra004720.1-P	Field mustard	cytosol	81.64	81.96
CDY50821	Canola	cytosol	81.64	81.96
CDX98329	Canola	cytosol, peroxisome, plastid	81.05	81.85
CDY49252	Canola	cytosol	80.86	81.66
CDX71925	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	81.45	81.6
CDX67764	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	80.86	81.5
Bra007417.1-P	Field mustard	cytosol	80.66	81.46
AT2G42790.1	Thale cress	cytosol	80.86	81.34
Bra003355.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	80.66	81.3
Os02t0232400-01	Rice	nucleus, plastid	79.1	81.0
TraesCS5A01G413300.1	Wheat	mitochondrion	79.3	80.72
TraesCS5B01G416700.1	Wheat	golgi	79.1	80.52
TraesCS5D01G422000.1	Wheat	unclear	79.1	80.52
Zm00001d016248_P001	Maize	mitochondrion	78.71	80.12
EES04804	Sorghum	mitochondrion	78.71	79.8
KRH14452	Soybean	nucleus	79.49	79.65
HORVU5Hr1G099820.5	Barley	plastid	78.71	78.71
KRH73702	Soybean	cytosol, plastid	76.95	76.95
CDY49249	Canola	cytosol	70.51	76.81
Bra007416.1-P	Field mustard	cytosol	67.19	76.61
KRH46090	Soybean	endoplasmic reticulum, nucleus	76.56	76.41
KRG98876	Soybean	nucleus, plastid	76.37	76.07
CDY00587	Canola	cytosol	68.55	74.68
Bra014554.1-P	Field mustard	cytosol	68.36	74.47
AT3G58740.1	Thale cress	cytosol	68.95	73.54
CDX71926	Canola	cytosol	66.6	71.19
CDX89002	Canola	endoplasmic reticulum, golgi	35.16	63.6
HORVU0Hr1G030280.2	Barley	cytosol	20.12	57.22
VIT_06s0080g00770.t01	Wine grape	cytosol	23.05	55.66
CDY49250	Canola	extracellular	8.59	54.32
CDX71928	Canola	cytosol	69.92	43.29
VIT_03s0088g00560.t01	Wine grape	cytosol	8.01	38.32
VIT_13s0156g00180.t01	Wine grape	mitochondrion	22.85	24.79

Protein Annotations

Gene3D:1.10.230.10	Gene3D:1.10.580.10	EntrezGene:100255795	wikigene:100255795	MapMan:5.7.3.6.1	EMBL:AM449368
ProteinID:CAN80865	ProteinID:CAN80865.1	ProteinID:CBI31775	ProteinID:CBI31775.3	InterPro:Citrate_synth-like_lrg_a-sub	InterPro:Citrate_synth-like_sm_a-sub
InterPro:Citrate_synthase	InterPro:Citrate_synthase_AS	InterPro:Citrate_synthase_bac-typ	InterPro:Citrate_synthase_sf	UniProt:D7TMQ2	EMBL:FN595999
GO:GO:0003674	GO:GO:0003824	GO:GO:0006091	GO:GO:0006099	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0046912	InterPro:IPR016142	InterPro:IPR016143	EntrezGene:LOC100255795
wikigene:LOC100255795	PFAM:PF00285	PIRSF:PIRSF001369	PRINTS:PR00143	ScanProsite:PS00480	PANTHER:PTHR11739
PANTHER:PTHR11739:SF4	SUPFAM:SSF48256	TIGR:TC57608	UniParc:UPI000198449D	ArrayExpress:VIT_12s0142g00610	EnsemblPlantsGene:VIT_12s0142g00610
EnsemblPlants:VIT_12s0142g00610.t01	unigene:Vvi.1517	RefSeq:XP_002284064	RefSeq:XP_002284064.1	SEG:seg	:

Description

Citrate synthase [Source:UniProtKB/TrEMBL;Acc:D7TMQ2]

Coordinates

chr12:+:531620..552863

Molecular Weight (calculated)

56347.9 Da

IEP (calculated)

9.026

GRAVY (calculated)

-0.146

Length

512 amino acids

Sequence
(BLAST)

001: MERADSSALA RSRLAILSAH LEACLKSSSF GSVIQPSCVS AQSGIQPPGD LKGSLTIVDD RTAKKYQVQV SSHGTVKATD LKKITTGNND KGLKLYDPGY
101: LNTAPVRSSI CYIDGDAGIL RYRGYPIEEL AESSSFLEVA YLLMYGNLPS ESQLADWEFA VSQHSAVPQG ILDIIQAMPH DAHPMGVLVS AMSALSVFHP
201: DANPALRGQD LYQSKQVRDK QIARVLGKAP TIAAAAYLRM AGRPPVLPSS SFSYSENFLY MLDSLSNRSY KPNPRLARVL DILFILHAEH EMNCSTAAAR
301: HLSSSGVDVY TALAGAVGAL YGPLHGGANE AVLKMLSEIG TIENIPEFIE GVKNRKRKMS GFGHRVYKNY DPRAKVIKKL AEEVFSIVGR DPLIEVAVAL
401: EKAALSDEYF IKRKLYPNVD FYSGLIYRAM GFPTEFFPVL FAIPRMAGYL AHWRESLDDP DTKIMRPQQV YTGEWLRHFM PVKERMMSAE ADRLGQVSIS
501: NATRRRLAGS GM

Best Arabidopsis Sequence Match ( AT3G58750.1 )
(BLAST)

001: MEISQRVKAR LAVLTAHLAV SDTVGLEQVL PAIAPWCTSA HITAAPHGSL KGNLTIVDER TGKKYQVPVS EHGTVKAVDL KKITTGKDDK GLKLYDPGYL
101: NTAPVRSSIC YIDGDEGILR YRGYPIEELA ESSTFIEVAY LLMYGNLPSQ SQLADWEFTV SQHSAVPQGV LDIIQSMPHD AHPMGVLVSA MSALSIFHPD
201: ANPALSGQDI YKSKQVRDKQ IVRILGKAPT IAAAAYLRTA GRPPVLPSAN LSYSENFLYM LDSMGNRSYK PNPRLARVLD ILFILHAEHE MNCSTAAARH
301: LASSGVDVYT ACAGAVGALY GPLHGGANEA VLKMLAEIGT AENIPDFIEG VKNRKRKMSG FGHRVYKNYD PRAKVIKKLA DEVFSIVGRD PLIEVAVALE
401: KAALSDEYFV KRKLYPNVDF YSGLIYRAMG FPPEFFTVLF AVPRMAGYLS HWRESLDDPD TRIMRPQQAY TGVWMRHYEP VRERTLSSDS DKDKFGQVSI
501: SNASRRRLAG SSAL

Arabidopsis Description

CSY2Citrate synthase 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9LXS6]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,mitochondrion,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.