Factsheet for VIT_02s0012g01800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_05s0051g00720.t01
VIT_16s0022g00510.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	VIT_05s0051g00720.t01	AT2G33150.1	21798944
AT2G35500.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G35500.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT2G35500.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74369	Soybean	plastid	61.73	62.06
Bra017318.1-P	Field mustard	plastid	63.61	60.82
CDY32125	Canola	plastid	63.61	60.82
AT2G35500.1	Thale cress	plastid	62.8	60.21
PGSC0003DMT400038338	Potato	plastid	61.19	59.58
HORVU1Hr1G050970.1	Barley	cytosol	40.97	59.14
Solyc08g076410.2.1	Tomato	plastid	61.46	59.07
GSMUA_Achr2P12160_001	Banana	plastid	59.03	56.44
KRH49412	Soybean	cytosol	32.08	50.85
TraesCS1A01G195500.2	Wheat	plastid	49.33	48.28
Os10t0577700-01	Rice	plastid	48.52	48.0
TraesCS1D01G199100.1	Wheat	plastid	48.79	47.88
EER94425	Sorghum	plastid	48.25	46.25
Zm00001d030109_P002	Maize	plastid	49.33	45.75
CDY61809	Canola	cytosol	26.68	41.95
CDX94450	Canola	cytosol	25.88	41.03

Protein Annotations

KEGG:00400+2.7.1.71	EntrezGene:100266016	wikigene:100266016	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1
ProteinID:CBI33850	ProteinID:CBI33850.3	InterPro:CS_dom	UniProt:D7TTT5	EMBL:FN596247	GO:GO:0000287
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015074	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978
EntrezGene:LOC100266016	wikigene:LOC100266016	PFAM:PF01202	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11
SUPFAM:SSF49764	InterPro:Shikimate/glucono_kinase	UniParc:UPI00015C8D13	ArrayExpress:VIT_02s0012g01800	EnsemblPlantsGene:VIT_02s0012g01800	EnsemblPlants:VIT_02s0012g01800.t01
unigene:Vvi.3725	RefSeq:XP_002277265	RefSeq:XP_002277265.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:8212643..8220356

Molecular Weight (calculated)

40502.8 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.261

Length

371 amino acids

Sequence
(BLAST)

001: MAASLFFFSQ NPFTSPQISH PKISLSSPKP TLTLFTPPPF ISNNATRRLS CKALSTISVN PSNYEFSDAS SEMELRLQLG GGGTLSSRDI FVDAEDSSLK
101: IGVKQSGSFI TLVEINKLYE KIKSSETIWY IDEDQLVVNL KKQDPDLKWP DIVESWESLT AGAMQLLKGT SIYIVGDSTE INDKVARELA VGLGYTPLNT
201: KELLETFAKQ SIDSWVTADG SESVAEAESA VLENLSSHVR AVIATLGGLH GAARRADKWR HLYAGFTVWL SQSESIDEES AKEEARRHIQ EGSLGYSNAD
301: VVVKLHGWDA DHAKTVAQAS LSALKQLIMS DKKLPGKKSL YIRLGCRGDW PDIKPPGWDP STGAEVPAGT L

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.