Factsheet for Bra017318.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005522.1-P
Bra005852.1-P
Bra009112.1-P
Bra012650.1-P
Bra013872.1-P
Bra016871.1-P
Bra017974.1-P
Bra021829.1-P
Bra022927.1-P
Bra028759.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35500.1	Bra005522.1-P	AT2G33150.1	21798944
AT2G35500.1	Bra021829.1-P	AT2G33150.1	21798944
AT2G35500.1	Bra022927.1-P	AT2G33150.1	21798944
AT2G35500.1	Bra016871.1-P	AT2G42490.1	21798944
AT2G35500.1	Bra017974.1-P	AT3G49580.1	21798944
AT2G35500.1	Bra012650.1-P	AT4G17680.1	21798944
AT2G35500.1	Bra013872.1-P	AT4G25200.1	21798944
AT2G35500.1	Bra005852.1-P	AT5G05410.1	18552202
AT2G35500.1	Bra009112.1-P	AT5G05410.1	18552202
AT2G35500.1	Bra028759.1-P	AT5G05410.1	18552202

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32125	Canola	plastid	99.74	99.74
AT2G35500.1	Thale cress	plastid	84.02	84.24
VIT_02s0012g01800.t01	Wine grape	plastid	60.82	63.61
KRH74369	Soybean	plastid	56.7	59.62
HORVU1Hr1G050970.1	Barley	cytosol	38.92	58.75
PGSC0003DMT400038338	Potato	plastid	55.93	56.96
CDY61809	Canola	cytosol	34.02	55.93
Solyc08g076410.2.1	Tomato	plastid	55.15	55.44
CDX94450	Canola	cytosol	33.25	55.13
GSMUA_Achr2P12160_001	Banana	plastid	53.61	53.61
TraesCS1D01G199100.1	Wheat	plastid	46.65	47.88
Os10t0577700-01	Rice	plastid	46.13	47.73
TraesCS1A01G195500.2	Wheat	plastid	46.13	47.23
EER94425	Sorghum	plastid	46.13	46.25
Zm00001d030109_P002	Maize	plastid	47.68	46.25
KRH49412	Soybean	cytosol	27.58	45.73

Protein Annotations

KEGG:00400+2.7.1.71	Gene3D:2.60.40.790	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra017318	EnsemblPlants:Bra017318.1
EnsemblPlants:Bra017318.1-P	InterPro:CS_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:HSP20-like_chaperone	InterPro:IPR007052	InterPro:IPR008978	UniProt:M4DLD7
PFAM:PF01202	PFscan:PS51203	PANTHER:PTHR21087	PANTHER:PTHR21087:SF11	SUPFAM:SSF49764	InterPro:Shikimate/glucono_kinase
UniParc:UPI0002543C7C	SEG:seg	:	:	:	:

Description

AT2G35500 (E=1e-182) | shikimate kinase-related

Coordinates

chrA04:+:15391271..15393076

Molecular Weight (calculated)

42664.3 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.365

Length

388 amino acids

Sequence
(BLAST)

001: MAALSSSATI FYSPSLTPFT AGQRSLSSPT RIRSSPRILR GFHSLRNREF HRFSQNVTAG GRFNSFSCNC LSAVSTTTLD YEFTDGGKEV ELRLRLKTGE
101: TLSPKDISVD ADGTSLAVKE KRNGLLVTLL ETNQLFEKIM PSETIWYIDE DQLVVNMKKV DGELKWPDVV ESWESLTAGM MQLLKGASIY VVGDSTEINQ
201: KVCRELAVGL GYSPLDSMEL LESFSKQTID SWILAEGEDS VAEAESSVLE SLSSHVRTVV STLGGKHGAA GRADKWRHLY SGFTVWVSQT EATDEESAKE
301: EARRNKQERE IGYSNADVVV KLQGWDPTHA KSVAQASLSA LKQLIISDKG LPGKKSLYIR LGCRGDWPNI KPPGWDPSSD TGAHPSFS

Best Arabidopsis Sequence Match ( AT2G35500.1 )
(BLAST)

001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT

Arabidopsis Description

SKL2Probable inactive shikimate kinase like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82290]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.