Factsheet for Bra013872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000236.1-P
Bra002539.1-P
Bra003197.1-P
Bra003236.1-P
Bra004642.1-P
Bra005436.1-P
Bra005847.1-P
Bra006073.1-P
Bra006697.1-P
Bra006753.1-P
Bra007101.1-P
Bra007234.1-P
Bra008842.1-P
Bra009093.1-P
Bra009378.1-P
Bra011306.1-P
Bra011328.1-P
Bra013872.1-P
Bra014106.1-P
Bra015488.1-P
Bra016529.1-P
Bra016758.1-P
Bra016762.1-P
Bra017859.1-P
Bra018972.1-P
Bra020295.1-P
Bra022125.1-P
Bra023126.1-P
Bra024287.1-P
Bra024715.1-P
Bra026836.1-P
Bra026882.1-P
Bra026884.1-P
Bra026954.1-P
Bra026958.1-P
Bra026971.1-P
Bra027642.1-P
Bra027801.1-P
Bra028253.1-P
Bra028267.1-P
Bra029174.1-P
Bra029563.1-P
Bra029883.1-P
Bra031731.1-P
Bra037775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25200.1	Bra015488.1-P	AT1G06270.1	21798944
AT4G25200.1	Bra016758.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra016762.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026836.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026882.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026884.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026954.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026958.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra026971.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra028267.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra031731.1-P	AT1G12620.1	21798944
AT4G25200.1	Bra016529.1-P	AT1G19010.1	21798944
AT4G25200.1	Bra024715.1-P	AT1G26460.1	21798944
AT4G25200.1	Bra023126.1-P	AT1G30730.1	21798944
AT4G25200.1	Bra018972.1-P	AT1G52560.1	21798944
AT4G25200.1	Bra027642.1-P	AT1G63470.1	21798944
AT4G25200.1	Bra027801.1-P	AT1G63470.1	21798944
AT4G25200.1	Bra022125.1-P	AT1G70910.1	21798944
AT4G25200.1	Bra005436.1-P	AT2G34340.1	21798944
AT4G25200.1	Bra000236.1-P	AT2G41700.1	21798944
AT4G25200.1	Bra004642.1-P	AT2G41720.1	21798944
AT4G25200.1	Bra014106.1-P	AT2G47450.1	21798944
AT4G25200.1	Bra029883.1-P	AT3G10970.1	21798944
AT4G25200.1	Bra003197.1-P	AT3G54826.1	21798944
AT4G25200.1	Bra007101.1-P	AT3G54826.1	21798944
AT4G25200.1	Bra003236.1-P	AT3G56290.1	21798944
AT4G25200.1	Bra007234.1-P	AT3G56290.1	21798944
AT4G25200.1	Bra029563.1-P	AT4G05180.1	21798944
AT4G25200.1	Bra013872.1-P	AT4G25200.1	21798944
AT4G25200.1	Bra011306.1-P	AT4G31875.1	21798944
AT4G25200.1	Bra011328.1-P	AT4G32190.1	21798944
AT4G25200.1	Bra017859.1-P	AT4G37890.1	21798944
AT4G25200.1	Bra005847.1-P	AT5G05190.1	21798944
AT4G25200.1	Bra009093.1-P	AT5G05190.1	21798944
AT4G25200.1	Bra009378.1-P	AT5G09320.1	21798944
AT4G25200.1	Bra006073.1-P	AT5G10710.1	21798944
AT4G25200.1	Bra008842.1-P	AT5G13260.1	21798944
AT4G25200.1	Bra028253.1-P	AT5G51440.1	21798944
AT4G25200.1	Bra029174.1-P	AT5G51440.1	21798944
AT4G25200.1	Bra006753.1-P	AT5G58575.1	21798944
AT4G25200.1	Bra002539.1-P	AT5G59720.1	21798944
AT4G25200.1	Bra006697.1-P	AT5G59720.1	21798944
AT4G25200.1	Bra020295.1-P	AT5G59720.1	21798944
AT4G25200.1	Bra024287.1-P	AT5G64350.1	21798944
AT4G25200.1	Bra037775.1-P	AT5G64350.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89437	Canola	mitochondrion	99.53	99.53
CDY03368	Canola	mitochondrion	98.59	98.59
AT4G25200.1	Thale cress	mitochondrion	80.28	81.43
Bra029174.1-P	Field mustard	mitochondrion	63.38	68.53
VIT_16s0022g00510.t01	Wine grape	mitochondrion	58.22	59.62
KRH23958	Soybean	mitochondrion	56.34	56.6
Solyc08g078700.2.1	Tomato	plastid	53.99	54.76
PGSC0003DMT400012249	Potato	mitochondrion	53.99	54.5
Bra028253.1-P	Field mustard	mitochondrion	39.91	52.8
KRH39841	Soybean	mitochondrion	32.86	47.62
GSMUA_Achr10P...	Banana	mitochondrion	47.89	47.22
TraesCS7D01G178900.1	Wheat	cytosol	25.82	45.08
TraesCS7B01G083300.1	Wheat	cytosol	25.35	40.6
OQU85385	Sorghum	mitochondrion	40.85	39.37
Os02t0758000-01	Rice	plastid	40.38	39.09
TraesCS6B01G346700.1	Wheat	mitochondrion	38.03	37.67
Zm00001d052194_P001	Maize	mitochondrion	38.5	37.61
TraesCS6A01G316200.1	Wheat	mitochondrion	37.56	37.21
TraesCS6D01G295500.1	Wheat	mitochondrion	37.56	37.04
TraesCS7A01G232500.1	Wheat	plastid	34.74	35.92
TraesCS7B01G083100.1	Wheat	plastid	35.68	35.68
TraesCS7D01G179200.1	Wheat	cytosol, plastid	34.74	35.41
TraesCS7A01G236700.1	Wheat	plastid	35.21	35.38
TraesCS7D01G179100.1	Wheat	plastid	35.68	35.35
TraesCS7D01G179400.1	Wheat	plastid	34.74	35.24
TraesCS7A01G177500.1	Wheat	cytosol, plastid	35.68	35.19
TraesCS7A01G177700.1	Wheat	cytosol, plastid	35.68	35.19
TraesCS7D01G179300.1	Wheat	plastid	34.74	34.91
TraesCS7A01G177600.1	Wheat	plastid	35.21	34.88
TraesCS7B01G083500.1	Wheat	mitochondrion	38.03	34.76
TraesCS7B01G083400.1	Wheat	plastid	34.74	34.74
TraesCS7B01G082900.1	Wheat	plastid	32.39	34.5
TraesCS7D01G179000.1	Wheat	plastid	34.27	34.27
TraesCS7D01G179500.1	Wheat	plastid	34.27	33.95
TraesCS7B01G083200.2	Wheat	plastid	35.21	33.94
HORVU7Hr1G036500.7	Barley	plastid	32.39	33.82
TraesCS7D01G179600.1	Wheat	mitochondrion	37.09	33.76
TraesCS7D01G232600.1	Wheat	plastid	32.86	33.49
OQU75930	Sorghum	plastid	34.27	32.74
OQU75612	Sorghum	plastid	34.27	32.74
Zm00001d044874_P001	Maize	cytosol, plastid	31.46	32.21
OQU76071	Sorghum	plastid	30.52	32.18
TraesCS2B01G531300.1	Wheat	plastid	26.29	31.82
HORVU7Hr1G036570.2	Barley	cytosol	32.86	31.67
TraesCS7B01G130900.1	Wheat	plastid	23.0	30.25
EER89431	Sorghum	plastid	29.58	29.03
HORVU7Hr1G036470.3	Barley	cytosol, nucleus	32.86	28.93
EER89430	Sorghum	plastid	30.52	28.63
HORVU7Hr1G036540.3	Barley	mitochondrion, nucleus, plastid	34.27	28.29
TraesCS7A01G177800.1	Wheat	nucleus	30.52	28.26
KXG19616	Sorghum	plastid	34.74	27.51
HORVU6Hr1G077710.3	Barley	cytosol	33.8	26.37
Os06t0219500-00	Rice	mitochondrion	34.74	23.95
TraesCS5B01G123900.1	Wheat	plastid	22.07	19.67

Protein Annotations

EnsemblPlants:Bra013872.1	EnsemblPlants:Bra013872.1-P	EnsemblPlantsGene:Bra013872	Gene3D:2.60.40.790	GO:GO:0008150	GO:GO:0046686
InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF238	PFAM:PF00011	PFscan:PS01031	SEG:seg	SUPFAM:SSF49764	UniParc:UPI000254683C
UniProt:M4DBL2	MapMan:19.1.8.8	:	:	:	:

Description

AT4G25200 (E=1e-072) ATHSP23.6-MITO | ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)

Coordinates

chrA01:+:8169388..8170106

Molecular Weight (calculated)

23785.1 Da

IEP (calculated)

5.250

GRAVY (calculated)

-0.683

Length

213 amino acids

Sequence
(BLAST)

001: MASSLALRRL LSSTVAPGSR SFLRPQAASR LLNTNAVRSY DGGENERGVD VDRRSDRSVS RRGDDFFTDV FDPFSPTRSI SQVLNLMDQF MENPLLSATR
101: GMGASGARRG WDIKEKDDAL YLRIDMPGLS REDVKLALEN DTLVIRGEGK DVDDGGEEGG ETGNRRFTSR IGLPEKVYKT DEIKAEMKNG VLKVVVPKMK
201: EEERNDVRQI EIN

Best Arabidopsis Sequence Match ( AT4G25200.1 )
(BLAST)

001: MASALALKRL LSSSIAPRSR SVLRPAVSSR LFNTNAVRSY DDDGENGDGV DLYRRSVPRR RGDFFSDVFD PFSPTRSVSQ VLNLMDQFME NPLLSATRGM
101: GASGARRGWD IKEKDDALYL RIDMPGLSRE DVKLALEQDT LVIRGEGKNE EDGGEEGESG NRRFTSRIGL PDKIYKIDEI KAEMKNGVLK VVIPKMKEQE
201: RNDVRQIEIN

Arabidopsis Description

HSP23.6HSP23.6-MITO [Source:UniProtKB/TrEMBL;Acc:A0A178USN5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.