Factsheet for Bra002539.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002539.1-P
Bra006697.1-P
Bra020295.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	Bra002539.1-P	AT5G59720.1	21798944
AT5G59720.1	Bra006697.1-P	AT5G59720.1	21798944
AT5G59720.1	Bra020295.1-P	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49575	Canola	plastid	98.12	98.12
Bra006697.1-P	Field mustard	cytosol	88.12	92.76
Bra020295.1-P	Field mustard	cytosol	88.12	92.76
AT5G59720.1	Thale cress	cytosol	89.38	88.82
Bra018216.1-P	Field mustard	cytosol	81.88	83.44
TraesCS4A01G092200.1	Wheat	cytosol	70.0	74.17
TraesCS4B01G212200.1	Wheat	cytosol	72.5	73.89
EER95124	Sorghum	cytosol	72.5	73.42
TraesCS4D01G213100.1	Wheat	cytosol	71.88	73.25
Zm00001d028555_P001	Maize	extracellular, plasma membrane	71.88	72.78
Zm00001d028557_P001	Maize	mitochondrion	71.88	72.78
TraesCS4D01G212300.1	Wheat	cytosol	71.25	72.61
TraesCS4B01G212300.1	Wheat	cytosol	70.0	72.26
TraesCS4A01G092100.1	Wheat	cytosol	71.25	72.15
TraesCS4D01G213300.1	Wheat	cytosol	70.62	71.97
HORVU4Hr1G060720.2	Barley	cytosol	70.62	71.52
Os03t0266900-02	Rice	cytosol	68.75	71.43
KXG39718	Sorghum	cytosol	69.38	70.7
Os03t0267200-01	Rice	cytosol, plastid	69.38	69.81
TraesCS4D01G212500.1	Wheat	cytosol	67.5	69.68
EER95120	Sorghum	cytosol	68.75	69.62
Os03t0267000-00	Rice	cytosol, plastid	70.0	69.57
TraesCS4D01G212200.1	Wheat	cytosol	70.0	69.57
Bra018383.1-P	Field mustard	cytosol	67.5	69.23
TraesCS4A01G092900.1	Wheat	cytosol	68.12	68.99
Os03t0266300-01	Rice	nucleus, plasma membrane	69.38	68.94
TraesCS4B01G211600.1	Wheat	cytosol	66.88	68.15
Zm00001d028561_P001	Maize	cytosol	67.5	67.92
TraesCS4A01G092800.1	Wheat	cytosol	66.88	67.72
TraesCS4D01G212400.1	Wheat	cytosol	66.88	67.72
TraesCS4A01G092700.1	Wheat	cytosol	65.0	67.1
TraesCS4A01G092600.1	Wheat	cytosol	65.0	67.1
HORVU4Hr1G060760.1	Barley	cytosol	62.5	66.67
Zm00001d047841_P001	Maize	cytosol	67.5	66.26
Bra031725.1-P	Field mustard	cytosol	65.62	66.04
Bra018384.1-P	Field mustard	cytosol	65.62	66.04
Bra028141.1-P	Field mustard	cytosol	38.12	43.88
Bra027999.1-P	Field mustard	extracellular	40.62	37.79
Bra000703.1-P	Field mustard	extracellular	43.12	35.03

Protein Annotations

EnsemblPlants:Bra002539.1	EnsemblPlants:Bra002539.1-P	EnsemblPlantsGene:Bra002539	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF241	PFAM:PF00011
PFscan:PS01031	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0002543CF5	UniProt:M4CEA8	MapMan:19.1.8.1

Description

AT5G59720 (E=3e-062) HSP18.2 | HSP18.2 (heat shock protein 18.2)

Coordinates

chrA10:+:8974241..8974723

Molecular Weight (calculated)

17981.3 Da

IEP (calculated)

7.698

GRAVY (calculated)

-0.683

Length

160 amino acids

Sequence
(BLAST)

001: MSLIPSFFGG RRSNAFNPFS LDAWDPFEGF FTPSSLANAS GSTAREMAAF TNARVDWKET PEAHMFKADL PGLKKEEVKV EVEDKNILQI SGERSKENEE
101: KSDKWHRVER ASGKFMRRFK LPENAKMEEV KAAMENGVLT VTVPKAPEKK PEVKSIDISG

Best Arabidopsis Sequence Match ( AT5G59720.1 )
(BLAST)

001: MSLIPSIFGG RRSNVFDPFS QDLWDPFEGF FTPSSALANA STARDVAAFT NARVDWKETP EAHVFKADLP GLKKEEVKVE VEDKNVLQIS GERSKENEEK
101: NDKWHRVERA SGKFMRRFRL PENAKMEEVK ATMENGVLTV VVPKAPEKKP QVKSIDISGA N

Arabidopsis Description

HSP18.118.1 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19037]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.