Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G212500.1 | Wheat | cytosol | 96.13 | 96.13 |
| TraesCS4A01G092700.1 | Wheat | cytosol | 94.19 | 94.19 |
| HORVU4Hr1G060760.1 | Barley | cytosol | 89.03 | 92.0 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 83.23 | 85.43 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 84.52 | 82.91 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 84.52 | 82.91 |
| EER95120 | Sorghum | cytosol | 84.52 | 82.91 |
| Zm00001d028561_P001 | Maize | cytosol | 84.52 | 82.39 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 83.23 | 81.65 |
| TraesCS3A01G034500.1 | Wheat | cytosol | 68.39 | 70.2 |
| TraesCS3A01G034000.1 | Wheat | cytosol | 67.74 | 69.54 |
| TraesCS3A01G033900.1 | Wheat | cytosol | 67.74 | 69.54 |
| Bra020295.1-P | Field mustard | cytosol | 66.45 | 67.76 |
| CDY60563 | Canola | cytosol | 66.45 | 67.76 |
| CDY56096 | Canola | cytosol | 65.81 | 67.11 |
| AT3G46230.1 | Thale cress | cytosol | 67.1 | 66.67 |
| Bra006697.1-P | Field mustard | cytosol | 65.16 | 66.45 |
| AT1G53540.1 | Thale cress | cytosol | 67.1 | 66.24 |
| AT5G59720.1 | Thale cress | cytosol | 68.39 | 65.84 |
| CDX88719 | Canola | cytosol | 67.74 | 65.62 |
| CDX71079 | Canola | cytosol | 67.74 | 65.62 |
| Bra002539.1-P | Field mustard | plastid | 67.1 | 65.0 |
| Bra018216.1-P | Field mustard | cytosol | 65.81 | 64.97 |
| CDX86069 | Canola | cytosol | 65.81 | 64.97 |
| CDY49575 | Canola | plastid | 66.45 | 64.38 |
| CDX99119 | Canola | cytosol | 65.16 | 64.33 |
| TraesCS7A01G183800.1 | Wheat | cytosol | 48.39 | 48.39 |
| TraesCS3A01G035400.1 | Wheat | cytosol | 43.23 | 40.61 |
| TraesCS7A01G202200.1 | Wheat | mitochondrion, peroxisome | 35.48 | 39.86 |
| TraesCS6A01G087600.1 | Wheat | cytosol | 41.94 | 35.14 |
| TraesCS3A01G035500.1 | Wheat | mitochondrion, plastid | 43.87 | 32.69 |
| TraesCS2A01G312900.1 | Wheat | endoplasmic reticulum, golgi | 44.52 | 31.51 |
| TraesCS4A01G226700.1 | Wheat | plastid | 39.35 | 24.6 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G092600.1 | EnsemblPlantsGene:TraesCS4A01G092600 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 | PFscan:PS01031 |
| SEG:seg | SUPFAM:SSF49764 | TIGR:cd06472 | MapMan:19.1.8.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:99913715..99914182
Molecular Weight (calculated)
17393.5 Da
IEP (calculated)
5.383
GRAVY (calculated)
-0.634
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRGDVF DPFSLDLWDP FDGFPFGSGS GSIFPRTTSS DTASFAGTRI DWKETPEAHV FKVDVPGLRK EEVKVEVDDG NVLQISGERN KEQEEKTDTW
101: HRVERSSGKF LRRFRLPDNV KAEEIKAAME NGVLTVTVPK AEAKKPEVKP VQITG
101: HRVERSSGKF LRRFRLPDNV KAEEIKAAME NGVLTVTVPK AEAKKPEVKP VQITG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.