Factsheet for TraesCS4D01G212300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G092100.1
TraesCS4A01G092200.1
TraesCS4A01G092600.1
TraesCS4A01G092700.1
TraesCS4A01G092800.1
TraesCS4A01G092900.1
TraesCS4B01G211600.1
TraesCS4B01G212200.1
TraesCS4B01G212300.1
TraesCS4D01G212200.1
TraesCS4D01G212300.1
TraesCS4D01G212400.1
TraesCS4D01G212500.1
TraesCS4D01G213100.1
TraesCS4D01G213300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G59720.1	TraesCS4A01G092100.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4A01G092200.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4A01G092600.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4A01G092700.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4A01G092800.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4A01G092900.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4B01G211600.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4B01G212200.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4B01G212300.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G212200.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G212300.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G212400.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G212500.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G213100.1	AT5G59720.1	21798944
AT5G59720.1	TraesCS4D01G213300.1	AT5G59720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G212200.1	Wheat	cytosol	95.54	95.54
TraesCS4A01G092200.1	Wheat	cytosol	91.72	95.36
TraesCS4D01G213100.1	Wheat	cytosol	94.9	94.9
TraesCS4D01G213300.1	Wheat	cytosol	93.63	93.63
HORVU4Hr1G060720.2	Barley	cytosol	93.63	93.04
Zm00001d028557_P001	Maize	mitochondrion	89.17	88.61
Zm00001d028555_P001	Maize	extracellular, plasma membrane	88.53	87.97
Os03t0266300-01	Rice	nucleus, plasma membrane	89.81	87.58
EER95124	Sorghum	cytosol	87.9	87.34
KXG39718	Sorghum	cytosol	84.71	84.71
TraesCS4D01G212500.1	Wheat	cytosol	82.8	83.87
TraesCS4D01G212200.1	Wheat	cytosol	85.35	83.23
TraesCS4D01G212400.1	Wheat	cytosol	83.44	82.91
Zm00001d047841_P001	Maize	cytosol	82.8	79.75
CDY60563	Canola	cytosol	71.97	74.34
Bra020295.1-P	Field mustard	cytosol	71.97	74.34
CDY56096	Canola	cytosol	71.34	73.68
Bra006697.1-P	Field mustard	cytosol	70.7	73.03
CDX88719	Canola	cytosol	73.89	72.5
AT3G46230.1	Thale cress	cytosol	71.97	72.44
TraesCS3D01G046700.1	Wheat	cytosol	69.43	72.19
TraesCS3D01G046800.1	Wheat	cytosol	69.43	72.19
AT1G53540.1	Thale cress	cytosol	71.97	71.97
CDX86069	Canola	cytosol	71.97	71.97
CDX71079	Canola	cytosol	73.25	71.88
TraesCS3D01G045500.1	Wheat	cytosol	68.79	71.52
Bra018216.1-P	Field mustard	cytosol	71.34	71.34
CDX99119	Canola	cytosol	71.34	71.34
Bra002539.1-P	Field mustard	plastid	72.61	71.25
TraesCS3D01G045600.1	Wheat	cytosol	68.15	70.86
TraesCS3D01G045700.1	Wheat	cytosol	68.15	70.86
TraesCS3D01G046600.1	Wheat	cytosol	67.52	70.2
TraesCS3D01G046300.1	Wheat	cytosol	67.52	70.2
AT5G59720.1	Thale cress	cytosol	71.97	70.19
TraesCS3D01G045800.1	Wheat	cytosol	67.52	69.74
CDY49575	Canola	plastid	70.7	69.38
TraesCS7D01G185600.1	Wheat	cytosol	42.04	47.83
TraesCS7D01G185500.1	Wheat	cytosol	47.77	46.88
TraesCS3D01G044400.1	Wheat	cytosol	45.22	45.81
TraesCS7D01G205400.1	Wheat	nucleus	36.31	41.3
TraesCS4D01G086200.1	Wheat	endoplasmic reticulum	42.04	32.51
TraesCS2D01G311400.1	Wheat	endoplasmic reticulum, golgi	42.68	30.59

Protein Annotations

EnsemblPlants:TraesCS4D01G212300.1	EnsemblPlantsGene:TraesCS4D01G212300	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF240	PFAM:PF00011	PFscan:PS01031
SEG:seg	SUPFAM:SSF49764	TIGR:cd06472	MapMan:19.1.8.1	:	:

Description

No Description!

Coordinates

chr4D:+:365217434..365218278

Molecular Weight (calculated)

17468.5 Da

IEP (calculated)

5.870

GRAVY (calculated)

-0.626

Length

157 amino acids

Sequence
(BLAST)

001: MSLIRRSNVF DPFSLDFFDP FEGFPFGSGN SSSGSLVPRT SSDTAAFAGA RIDWKETSEA HVFKADVPGL KKEEVKVEVE DGNILQISGE RKKEQEEKTD
101: TWHRVERSSG KFLRRFCLPD NAKAEQVKAS MENGVLTVTV PKEEAKKPEV KSIQISG

Best Arabidopsis Sequence Match ( AT1G07400.1 )
(BLAST)

001: MSLIPSFFGN NRRSNSIFDP FSLDVWDPFK ELQFPSSLSG ETSAITNARV DWKETAEAHV FKADLPGMKK EEVKVEIEDD SVLKISGERH VEKEEKQDTW
101: HRVERSSGQF SRKFKLPENV KMDQVKASME NGVLTVTVPK VEEAKKKAQV KSIDISG

Arabidopsis Description

HSP17.817.8 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LNW0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.