Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G59720.1 | EER95120 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | EER95124 | AT5G59720.1 | 21798944 |
| AT5G59720.1 | KXG39718 | AT5G59720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028557_P001 | Maize | mitochondrion | 96.84 | 96.84 |
| Zm00001d028555_P001 | Maize | extracellular, plasma membrane | 96.84 | 96.84 |
| TraesCS4A01G092200.1 | Wheat | cytosol | 86.08 | 90.07 |
| KXG39718 | Sorghum | cytosol | 89.24 | 89.81 |
| TraesCS4D01G213100.1 | Wheat | cytosol | 89.24 | 89.81 |
| TraesCS4A01G092900.1 | Wheat | cytosol | 89.24 | 89.24 |
| EER95120 | Sorghum | cytosol | 89.24 | 89.24 |
| Os03t0266300-01 | Rice | nucleus, plasma membrane | 90.51 | 88.82 |
| TraesCS4A01G092100.1 | Wheat | cytosol | 88.61 | 88.61 |
| TraesCS4D01G213300.1 | Wheat | cytosol | 87.97 | 88.53 |
| TraesCS4B01G212200.1 | Wheat | cytosol | 87.97 | 88.53 |
| TraesCS4B01G212300.1 | Wheat | cytosol | 86.71 | 88.39 |
| TraesCS4D01G212200.1 | Wheat | cytosol | 89.87 | 88.2 |
| HORVU4Hr1G060720.2 | Barley | cytosol | 87.97 | 87.97 |
| TraesCS4A01G092800.1 | Wheat | cytosol | 87.97 | 87.97 |
| TraesCS4D01G212300.1 | Wheat | cytosol | 87.34 | 87.9 |
| Os03t0267000-00 | Rice | cytosol, plastid | 89.24 | 87.58 |
| TraesCS4D01G212400.1 | Wheat | cytosol | 87.34 | 87.34 |
| Os03t0266900-02 | Rice | cytosol | 84.81 | 87.01 |
| TraesCS4B01G211600.1 | Wheat | cytosol | 86.08 | 86.62 |
| Os03t0267200-01 | Rice | cytosol, plastid | 82.91 | 82.39 |
| EES02531 | Sorghum | cytosol | 74.05 | 76.97 |
| EES00358 | Sorghum | cytosol | 73.42 | 76.82 |
| EES00359 | Sorghum | cytosol | 72.78 | 76.67 |
| EES02532 | Sorghum | cytosol | 72.78 | 75.66 |
| Bra020295.1-P | Field mustard | cytosol | 70.89 | 73.68 |
| CDY60563 | Canola | cytosol | 70.89 | 73.68 |
| CDY56096 | Canola | cytosol | 70.25 | 73.03 |
| Bra002539.1-P | Field mustard | plastid | 73.42 | 72.5 |
| Bra006697.1-P | Field mustard | cytosol | 69.62 | 72.37 |
| CDX88719 | Canola | cytosol | 72.78 | 71.88 |
| AT3G46230.1 | Thale cress | cytosol | 70.89 | 71.79 |
| AT1G53540.1 | Thale cress | cytosol | 70.89 | 71.34 |
| CDX71079 | Canola | cytosol | 72.15 | 71.25 |
| AT5G59720.1 | Thale cress | cytosol | 72.15 | 70.81 |
| CDX86069 | Canola | cytosol | 70.25 | 70.7 |
| Bra018216.1-P | Field mustard | cytosol | 70.25 | 70.7 |
| CDY49575 | Canola | plastid | 71.52 | 70.62 |
| CDX99119 | Canola | cytosol | 69.62 | 70.06 |
| EES02535 | Sorghum | cytosol | 50.0 | 52.67 |
| EES02533 | Sorghum | cytosol | 41.77 | 40.0 |
| EER89539 | Sorghum | mitochondrion | 36.08 | 38.51 |
| EES04437 | Sorghum | mitochondrion | 40.51 | 34.97 |
| EES08263 | Sorghum | endoplasmic reticulum | 43.04 | 32.85 |
| KXG26390 | Sorghum | endoplasmic reticulum, extracellular, golgi | 44.3 | 32.41 |
Protein Annotations
| EnsemblPlants:EER95124 | EnsemblPlantsGene:SORBI_3001G426000 | EntrezGene:8081529 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF240 | PFAM:PF00011 |
| PFscan:PS01031 | ProteinID:EER95124 | ProteinID:EER95124.1 | RefSeq:XP_002468126.1 | SEG:seg | SUPFAM:SSF49764 |
| unigene:Sbi.1151 | UniParc:UPI0001A831A7 | UniProt:C5WQ43 | MapMan:19.1.8.1 | : | : |
Description
hypothetical protein
Coordinates
chr1:-:70571281..70572094
Molecular Weight (calculated)
17854.0 Da
IEP (calculated)
5.876
GRAVY (calculated)
-0.672
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLIRRSNVF DPFSLDLWDP FEGFPFGSGG SNSLFPSFPR TSSETAAFAG ARIDWKETPE AHVFKADVPG LKKEEVKVEV EDGNILQISG ERNKEQEEKT
101: DTWHRVERSS GRFLRRFRLP ENAKTEQIRA AMENGVLTVT VPKEDVKKPE VKSIQISG
101: DTWHRVERSS GRFLRRFRLP ENAKTEQIRA AMENGVLTVT VPKEDVKKPE VKSIQISG
001: MSLIPSIFGG RRTNVFDPFS LDVFDPFEGF LTPSGLANAP AMDVAAFTNA KVDWRETPEA HVFKADLPGL RKEEVKVEVE DGNILQISGE RSNENEEKND
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
101: KWHRVERSSG KFTRRFRLPE NAKMEEIKAS MENGVLSVTV PKVPEKKPEV KSIDISG
Arabidopsis Description
HSP17.6C17.6 kDa class I heat shock protein 3 [Source:UniProtKB/Swiss-Prot;Acc:P13853]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.